Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1144 ATGTGGCTCTTTGGTTTTTCCCCCACAAAGCCTAGAAACCTTTGGATAATTGGTGCAATTCTGCTGGTCATCCTCCTCACTATCATCTTAAAGAAGTGGGCTATCTATCTAGAGGCCCAAGCACACAAATGTTCCATGGAAAAAGCCCAGAGAAACTGTGAGAATTACCTGCAAATTTCCAATCTATGCTGCACGGGTGTGATAAGGACTTATGCGCTTGAGGAGTTGAAAATGGCGACCACGGATTTCAGAATTCGAATCGGGGTTGGAGCCACTTCATTTGTGTATCTGGCGGAGCTTGGCGATGGAAGGTTAGGTGCTGTGAAGCGCGTAATGGAGGAGAGAGGTGGGAGCAAGAAGATGTTCTTGGATGAAGTCTCGGTTCTTCTCAGGATTTCTCACCCTAATTTGGTGGGATTGATGGGGTTCTGCCTAGAGAAAGGAGAACAACTTCTACTACTAGAGTATGTCCCCAACAAGAGCCTCTTTGATAGAATGCACACATTCCGTGGCCAATCTGAGGGCATACTCTCATGGTCCAACCGCTTGAACATTGCCCTAGACATCGCTCGTGCTCTCGACTACCTTCACTCCCAAGCCGACCCTCCTATCATACACAGAGATGTCAAGTCCTCCAACATTCTCTTGATCGACAACGATCACGCCAAACTAGCAGACTTTGGGCTATGCAAATTGGGGTACAATGATAGGTATGGCTCACAATCTCCCACCATTGTCAAGGGCTCCTTCGGCTATGTCGACACTAATTACCTTAAGACTGGCCATGTCTCATCAAAGAGCGATGTATATAGCTTTGGGGTCCTACTTCTTGAGCTAATAACCGGGCTCAGATCGATACAAGACTCTACGACGCTTGCAGAATGGACTGAGGAGGCCCGGAAGAATGATTCCATAGAGGTTTTGGTTGGATTGTTGGATCCCAAACTCAATGGGGATGTCAATGTAGAGCAGCTTCGGGTGTTGATGGAGGTGGCCAACTCGGCTTTACTTGAAAAGTCAGAAGCTAGACCAGACATGAGAGACATTGTAGATAGGATTTTGGGATGCATGGAACTTCATCAACTTCAATCTGAGTTGCCAGTTTAA 1107 0.4688 MWLFGFSPTKPRNLWIIGAILLVILLTIILKKWAIYLEAQAHKCSMEKAQRNCENYLQISNLCCTGVIRTYALEELKMATTDFRIRIGVGATSFVYLAELGDGRLGAVKRVMEERGGSKKMFLDEVSVLLRISHPNLVGLMGFCLEKGEQLLLLEYVPNKSLFDRMHTFRGQSEGILSWSNRLNIALDIARALDYLHSQADPPIIHRDVKSSNILLIDNDHAKLADFGLCKLGYNDRYGSQSPTIVKGSFGYVDTNYLKTGHVSSKSDVYSFGVLLLELITGLRSIQDSTTLAEWTEEARKNDSIEVLVGLLDPKLNGDVNVEQLRVLMEVANSALLEKSEARPDMRDIVDRILGCMELHQLQSELPV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1144 368 Pfam Protein kinase domain 86 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1144 368 Gene3D Transferase(Phosphotransferase) domain 1 157 365 - -
Vvi2g1144 368 ProSiteProfiles Protein kinase domain profile. 81 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1144 368 SUPERFAMILY Protein kinase-like (PK-like) 69 352 IPR011009 -
Vvi2g1144 368 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 39 362 IPR047117 -
Vvi2g1144 368 SMART serkin_6 81 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1144 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vvi2g1144 368 Gene3D Phosphorylase Kinase; domain 1 42 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1144 Vvi-Chr2 18277061 18278761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1144 68 360 Receptor kinase-like Gene Family AT3G19300 38.796 2.21e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi2g1144 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1144 - - vvi:100242493 710.294