Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1122 ATGAACAACAGCAACAGCAGCAATTTGAAGCAAGATCTGGAAAACCAAAGCGATCACAGCTCCAACCACACCTTCTCTCAGCCTCAGCCTCAGCCTCAGCCTCAGTCTCGCCGTCCCCGTGGCTTCGCGGCCACGGCGGCGGCAGCAGCGGCTGCGGCTGCCACCGGCGGAGGAGGAGGAGGAGGAGGGGGAAAGGGGAAGAAGGAGAGGGAGAAGGAGAAGGAGCGGACCAAGCTTCGGGAGCGGCACCGCCGGGCTATCACCAGCCGGATGCTTGCCGGACTCCGCCAGTACGGCAACTTTCCGCTTCCTGCGAGGGCTGATATGAATGACGTTTTGGCGGCTCTCGCTCGCGAGGCCGGTTGGACCGTGGAGGCCGACGGCACAACGTATCGGCAGTCTCCGCCTCCCTCACAGATGGCAACATTTCCTGTTAGGTCAGTTGAAAGCCCACTATCAGCTAGTTCTTTGAGAAATTGCTCTGCAAAAGGATCATTAGACTGTCAGCCATCTGTTCTCAGAATTGATGAGAGTTTATCACCTGCATCTCTTGATTCTGTTGTGGTTTCTGAGAGGGATACAAAGAGTGAGAAGTACACAAGTACCAGCCCCATTAGCTCAGCAGAATGCCTGGAGGCTGATCAGCTTATGCGAGATGTTCGTTCTGGGGAGCATGAGAACGATTTTACTGGAACTCCTTATGTACCTGTTTATGTAATGCTTGCTACAGGTGTTATCAACAACTTCTGTCAGTTGGTTGATCCTGATGGCATTAGACAGGAGTTGAGTCATATGAAGTCTTTACACACAGATGGAGTTGTGGTAGATTGTTGGTGGGGTATTGTTGAAGGATGGAGCCCACAGAAATATGAATGGTCTGGTTATAGGGAACTGTTTAACATCATTCGAGAGTTCAAGCTAAAATTGCAGGTTGTGATGGCATTTCATGAGTATGGGGGAAATGGCTCTGGCGATGTGATGATCTCTCTTCCCCAGTGGGTTCTGGAGATTGGAAAAGAGAATCAAGATATATTTTTTACAGATCGTGAAGGAAGGAGAAATACTGAATGCCTGTCTTGGGCCATTGACAAGGAACGGGTATTAAAAGGAAGAACTGGTATTGAGGTCTATTTTGATTTCATGAGAAGCTTCCGGACAGAGTTTGATGACTTGTTTGCAGAGGGTATCATTTCTGCTGTTGAAATTGGACTAGGAGCATCTGGGGAGCTAAAATACCCTTCTTTTTCTGAGAGAATGGGATGGGCGTACCCTGGTATTGGTGAATTTCAGTGTTATGATAAATATTCACAACAGAATCTGCGAAAAGCTGCTAAATTGCGTGGGCATTCATTCTGGGCCAGAGGACCAGATAATGCTGGTCAATATAACTCTAGGCCGCATGAAACTGGATTCTTCTGTGAAAGAGGTGATTATGATAGCTATTATGGCCGCTTTTTCCTCCATTGGTATGCTCAGTCACTAATTGACCATGCGGATAATGTTCTGTCTCTTGCAACCCTTGCATTTGAGGAAACTCAGTTAATCGTCAAGGTTCCAGCAGTCTATTGGTGGTACCGAACTGCTAGCCATGCAGCAGAGCTCACAGCCGGATATTACAACCCTACAAACCAGGATGGATACTCTCCAGTTTTTGAGGTTCTTAAGAAACATTCAGTGACAATGAAGTTTGTCTGCTCTGGATTGCAGATCACTTGCCAGGAAAATGATGATGCATTTGCTGATCCAGAAGGTCTGAGCTGGCAGGTTCTAAATTCAGCCTGGGATCGGGGTTTGACTGTAGCTGGTGAGAATGCAGTTCCATGTTATGATAGAGAAGGGTACATGAGAATAGCTGAGATAGCAAAACCCAGGAATGATCCTGATCGTCGTCACTTGTCATTCTTTGTATATCAACAGCCATCTCCCTTGGTTGAAAGAACTATTTGGTTCTCCGAATTGGACTACTTCATCAAATGCATGCATGGGGAAATTGCAGGCTATCTAGACCCCTGA 2013 0.4744 MNNSNSSNLKQDLENQSDHSSNHTFSQPQPQPQPQSRRPRGFAATAAAAAAAAATGGGGGGGGGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSPPPSQMATFPVRSVESPLSASSLRNCSAKGSLDCQPSVLRIDESLSPASLDSVVVSERDTKSEKYTSTSPISSAECLEADQLMRDVRSGEHENDFTGTPYVPVYVMLATGVINNFCQLVDPDGIRQELSHMKSLHTDGVVVDCWWGIVEGWSPQKYEWSGYRELFNIIREFKLKLQVVMAFHEYGGNGSGDVMISLPQWVLEIGKENQDIFFTDREGRRNTECLSWAIDKERVLKGRTGIEVYFDFMRSFRTEFDDLFAEGIISAVEIGLGASGELKYPSFSERMGWAYPGIGEFQCYDKYSQQNLRKAAKLRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYAQSLIDHADNVLSLATLAFEETQLIVKVPAVYWWYRTASHAAELTAGYYNPTNQDGYSPVFEVLKKHSVTMKFVCSGLQITCQENDDAFADPEGLSWQVLNSAWDRGLTVAGENAVPCYDREGYMRIAEIAKPRNDPDRRHLSFFVYQQPSPLVERTIWFSELDYFIKCMHGEIAGYLDP* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1122 670 MobiDBLite consensus disorder prediction 64 82 - -
Vvi2g1122 670 MobiDBLite consensus disorder prediction 1 31 - -
Vvi2g1122 670 Pfam BES1/BZR1 plant transcription factor, N-terminal 64 209 IPR008540 -
Vvi2g1122 670 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 169 662 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 SUPERFAMILY (Trans)glycosidases 229 663 IPR017853 -
Vvi2g1122 670 MobiDBLite consensus disorder prediction 1 82 - -
Vvi2g1122 670 Pfam Glycosyl hydrolase family 14 254 626 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 512 528 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 547 570 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 312 333 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 529 540 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 269 283 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 585 607 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 290 308 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 478 497 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 405 427 IPR001554 GO:0000272|GO:0016161
Vvi2g1122 670 Gene3D Glycosidases 225 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1122 Vvi-Chr2 17760217 17774420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1122 33 664 Glycoside Hydrolase AT5G45300 71.231 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vvi2g1122 Glyco_hydro_14 6.7e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1122 K01177 - vvi:100254478 1300.8