Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1121 ATGCCCTCCATATCTTCTAATGTTGGTCTCCAGGAGTGGGACCAAGCGAATTTCACTCGTACTTCCTCCAGAGCAGGTAGCAGCTCCACCCGAGCTTCATCGACTCAATCCTTGAACCCTTCTAGTCGCTTCCTCTCTCGCTTTAGTTTAATTCCTGGTAACATAAGCTTCAGGCTAAGCAGAGCAAGCAGTTTAGGTTCATCTCGAGCTTATCCTGTTTCTTCCTCAAGTATTACTTCGAACAGTGGAGAAGAGCTGCATCTACGCACTGGACCTTCCAATAGCTTGGTTAATAGAAATGGGACTCAACAAGGGAGTGATTTGCTTCCTGTATGCCTGATAAATAGATCTCCCACATCATATTATGAAGATAATTCTGCTAATAGAAGACTAGACCCTCCATCATCTGTTTTTTCTGACAATATGCGGGATAACCCAACAATTACTACTCATGATGTAAATTTACATTCTACAAGTGGTCATGCTGAGATAGAGAGCATGGAGACAAGGCTTGCTGATAGGCGGATTGGACCTCGAGAACCTGTAGAACGGAATGTTCGTTTTAGCCGAACCTTAAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGACGATCTTCATTTTCTGACTTAACATTTTGTCCTCTGAGAAGAGAGAGGGAAGCAAGAGATATGAGTCAGGGTAGTGAGAGGCAGGTTTTGGACAATGAGACAAGAGCACCAGCAACTGACAGGAATGTTGCAACCTCACCAACTTCATCTGGGTATCCTCTGTCCAGTATGTCTAGCTCCTTGTTTGGCAGCCAAGATTTTGAGATGGAAACCTCACGTTCTAGGGATGCCAGGTATCATGATCTGCTGGAACATAGATCAAATTTTCTTGAGAGGAGAAGACGAATAAGATCTCAGGTTCGTGCTCTTCAGAGGCTAGGCAGTCGTTTTGAGAACCTGTCTGGACATGAGAGATCTTGTATCTCATCAGGTCAACATAGAACAGGTCGTTGTACATGCCGTGTAAATACTCGGGATGCTAATTCAAATGATGACACTAGTGCTAGGGCTAGCATATCAAGAATTGTTATGTTGGCTGAAGCGCTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTTTGCCTTTGAAATTATACGACAAGTCACAAAAACATCAAAATGATGAGGCTGCACAATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAAGAGATACACAGGGTATGCCCACTTTGCCGCGGGGATATTTGCAGATCAGGTTCATTGCTTGCAGAAAACTAA 1428 0.4377 MPSISSNVGLQEWDQANFTRTSSRAGSSSTRASSTQSLNPSSRFLSRFSLIPGNISFRLSRASSLGSSRAYPVSSSSITSNSGEELHLRTGPSNSLVNRNGTQQGSDLLPVCLINRSPTSYYEDNSANRRLDPPSSVFSDNMRDNPTITTHDVNLHSTSGHAEIESMETRLADRRIGPREPVERNVRFSRTLSVGRLRDRVLRRSSFSDLTFCPLRREREARDMSQGSERQVLDNETRAPATDRNVATSPTSSGYPLSSMSSSLFGSQDFEMETSRSRDARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCISSGQHRTGRCTCRVNTRDANSNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPLKLYDKSQKHQNDEAAQCYICLVEYEEGDNMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICRSGSLLAEN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1121 475 MobiDBLite consensus disorder prediction 241 259 - -
Vvi2g1121 475 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 473 - -
Vvi2g1121 475 SUPERFAMILY RING/U-box 401 466 - -
Vvi2g1121 475 SMART ring_2 420 461 IPR001841 -
Vvi2g1121 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 467 IPR013083 -
Vvi2g1121 475 MobiDBLite consensus disorder prediction 220 259 - -
Vvi2g1121 475 MobiDBLite consensus disorder prediction 67 96 - -
Vvi2g1121 475 Pfam Ring finger domain 419 462 IPR001841 -
Vvi2g1121 475 FunFam Putative RING zinc finger domain superfamily protein 388 467 - -
Vvi2g1121 475 MobiDBLite consensus disorder prediction 15 39 - -
Vvi2g1121 475 ProSiteProfiles Zinc finger RING-type profile. 420 462 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1121 Vvi-Chr2 17750538 17758323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1121 32 467 C3H Transcription Factor Family AT5G45290 53.483 5.81e-115 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1121 - - vvi:100249371 874.389