Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1107 ATGAAAGAGAGCAAGCCATGGAGGCCATTCACAGCAAACTGCTGTTCAGCAGAAGACCACACAGTTCTGGGAAACTTCAGCCGCTGCAGGCCATCTAGATCGGAATTCTCCAAGAACATAGCTCCATTACCATCTTTTCGCCGCTTGTCGTTCTCCGATCTCAGCCGCTCTTCATCAACCCGAGTTAATGAAGACTTGGCACAATCTTTCGGTCCTGAATTGCATGATTTTCAGCTGAGTGAGCTGCGTGCGATTACGCAGAATTTTTCAAGTAATTTCTTTCTGGGAGAAGGAGGGTTTGGGACAGTGCATAAGGGTTATATTGATGAGAACTTAAGGCAAGGGTTGAAGGCTCAGGCTGTAGCTGTTAAGCTCTTGGATATTGAAGGCCTACAGGGGCATAGAGAATGGCTTGCTGAAGTAATATTTCTTGGGCAGCTTAGGCATCCAAATCTGGTAAAATTAATCGGGTATTGTTGTGAAGACGATGAGCGTCTCCTTGTGTATGAGTTCATGCCTAGAGGCAGCCTAGAGAATCACTTGTTCAAGAGGTTATCAGTGTCATTGCCATGGGGCACCAGGCTGAAGATCGCAGTAGGAGCAGCAAAAGGGCTCGCGTTCTTGCATGGTGCTGAGCAGCCTGTTATATATCGCGACTTCAAGACTTCCAATGTGTTGCTAGATTCTGATTTTACTGCAAAATTGTCGGATTTTGGACTTGCAAAGATGGGGCCTGAAGGATCAAAATCTCACGTTACTACCCGGGTAATGGGCACATTTGGATACGCTGCCCCGGAATATGTCTCAACAGGTCATTTAACAACTAAAAGCGATGTTTATAGCTTTGGAGTCGTGCTACTAGAAATGCTAACAGGAAGAAGATCAATGGATAAATCAAGACCCAAAAATGAGCAAAACCTTGTGGATTGGACAAAACCCTACTTGACTAGTAGCCGGAGGTTGCGCTACATAATGGACCCAAGACTTGCTGGTCAGTACTCGGTGAAAGGAGCGAAGGAGATCGCCCTCTTGGCATTACAATGCATAAGTTCAAACCCTAAAGACAGGCCGAGGATGCCCGGTGTAGTCGAAACCCTAGAAGGTCTGCAACATTTGAGGGACATGGCTGTCACTTGTGGGCAATGGCCAGCAACACCAAAATCTACAAGAAATGGAGCTGCTGTCAAAGGAAGGAGGGAGAATAATAGAGTTGGGACTCAATGTAAATCCACTCCTATTGCTCCCAAACCAGAAAAGCTAAGTAAGGGGACCTAA 1275 0.462 MKESKPWRPFTANCCSAEDHTVLGNFSRCRPSRSEFSKNIAPLPSFRRLSFSDLSRSSSTRVNEDLAQSFGPELHDFQLSELRAITQNFSSNFFLGEGGFGTVHKGYIDENLRQGLKAQAVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDDERLLVYEFMPRGSLENHLFKRLSVSLPWGTRLKIAVGAAKGLAFLHGAEQPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTFGYAAPEYVSTGHLTTKSDVYSFGVVLLEMLTGRRSMDKSRPKNEQNLVDWTKPYLTSSRRLRYIMDPRLAGQYSVKGAKEIALLALQCISSNPKDRPRMPGVVETLEGLQHLRDMAVTCGQWPATPKSTRNGAAVKGRRENNRVGTQCKSTPIAPKPEKLSKGT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1107 424 MobiDBLite consensus disorder prediction 383 424 - -
Vvi2g1107 424 SUPERFAMILY Protein kinase-like (PK-like) 68 369 IPR011009 -
Vvi2g1107 424 Gene3D Transferase(Phosphotransferase) domain 1 172 380 - -
Vvi2g1107 424 Gene3D Phosphorylase Kinase; domain 1 51 171 - -
Vvi2g1107 424 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1107 424 PANTHER OS01G0588500 PROTEIN-RELATED 60 370 - -
Vvi2g1107 424 ProSitePatterns Protein kinases ATP-binding region signature. 95 124 IPR017441 GO:0005524
Vvi2g1107 424 FunFam Serine/threonine-protein kinase BIK1 55 171 - -
Vvi2g1107 424 FunFam Serine/threonine-protein kinase PBS1 172 379 - -
Vvi2g1107 424 Pfam Protein tyrosine and serine/threonine kinase 95 366 IPR001245 GO:0004672|GO:0006468
Vvi2g1107 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vvi2g1107 424 CDD STKc_IRAK 95 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1107 Vvi-Chr2 17515272 17517964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1107 77 387 Glycoside Hydrolase AT3G07070 49.682 3.58e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi2g1107 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1107 - - vvi:100252865 836.639