Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1097 ATGAGCACCTTTCTGATCAGATGTCTGGTGCCGTTGCCCTTTTACCTTCTACTGCTGTACATTCTAATGAATCAAAGCAAAGCTCTAAGTCCTGATGGTGAGGCGCTTTTAAGCTTTAGGAATTCAATTGTTAGTTCAGATGGCGTCCTTCGTCAATGGAGACCAGAGGATCCTGACCCATGTGGTTGGAAAGGAGTGACATGTGATTTAGAAACCAAGAGAGTAATATACTTGAATCTTCCTCATCACAAGTTGAGTGGATCAATTTCACCTGATATTGGGAAGCTAGAGCTCTTGAAGCTTTTGGCTCTTCAAAACAACAACTTTTATGGAACGATTCCTTCAGAATTGGGAAATTGCACAGAGTTGCAAGCATTATATTTGCAGGGCAACTACTTAAGTGGATTAATTCCTAGTGAGTTGGGTAGCCTTTTAGAGCTTAAAGATCTGGATATTTCAAGCAACTCTCTCAGTGGATATATTCCTCCATCACTTGGGAAGTTAGACAAGCTCTCAACTTTCAATGTGTCAACCAATTTTCTGGTTGGACCAATACCATCTGATGGTGTACTCACCAATTTTTCTGGGAACTCCTTTGTCGGAAATCGCGGTTTGTGTGGGAAGCAGATTAATATCACCTGCAAAGACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAGACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTGCATCAGCAACAGTGGGTGCACTGCTTTTGGTGGCACTTATGTGCTTTTGGGGCTGCTTTCTTTATAAAAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGGTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATATCATCAAAAAGCTGGAGACATTGAATGAGGAACACATAATTGGTTCAGGCGGCTTTGGAACAGTGTACAAGCTTGCCATGGATGATGGCAATGTGTTTGCTTTGAAAAGAATTGTAAAGATGAATGAGTGCTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGAAGCATAAAACACAGATACCTGGTGAATTTGCGAGGATATTGCAATTCTCCCACCTCCAAATTGTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGCTGCAAAAGGACTAGCCTACCTGCATCATGATTGTTCCCCTCGGATTATACACCGTGACATAAAGTCGAGCAACATCTTGCTTGATGGCAATTTGGAGGCTCGAGTATCTGACTTTGGACTTGCTAAATTGTTGGAGGATGAGGAATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAATGTGAAGGGGTCCAGTCAGAAAGTCTTGATGCCCTGCTCTCGGTTGCCATCCAGTGTGTATCTCCAGGACCTGAGGATCGCCCAACGATGCACAGGGTGGTCCAGATACTTGAATCTGAAGTCATGACTCCATGCCCTAGTGACTTTTATGATTCCAACTCAGACTGA 1791 0.4283 MSTFLIRCLVPLPFYLLLLYILMNQSKALSPDGEALLSFRNSIVSSDGVLRQWRPEDPDPCGWKGVTCDLETKRVIYLNLPHHKLSGSISPDIGKLELLKLLALQNNNFYGTIPSELGNCTELQALYLQGNYLSGLIPSELGSLLELKDLDISSNSLSGYIPPSLGKLDKLSTFNVSTNFLVGPIPSDGVLTNFSGNSFVGNRGLCGKQINITCKDDSGGAGTKSQPPILDQNQVGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKCGKNDGRSLAMDVSGGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGSGGFGTVYKLAMDDGNVFALKRIVKMNECFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEALHERSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDIYSFGVLMLEVLAGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSESLDALLSVAIQCVSPGPEDRPTMHRVVQILESEVMTPCPSDFYDSNSD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1097 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Vvi2g1097 596 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Vvi2g1097 596 Pfam Protein kinase domain 313 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1097 596 Gene3D Transferase(Phosphotransferase) domain 1 387 585 - -
Vvi2g1097 596 Gene3D Ribonuclease Inhibitor 30 216 IPR032675 -
Vvi2g1097 596 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 285 386 - -
Vvi2g1097 596 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 75 579 - -
Vvi2g1097 596 ProSitePatterns Protein kinases ATP-binding region signature. 317 343 IPR017441 GO:0005524
Vvi2g1097 596 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Vvi2g1097 596 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 589 - -
Vvi2g1097 596 SUPERFAMILY L domain-like 30 200 - -
Vvi2g1097 596 ProSiteProfiles Protein kinase domain profile. 311 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1097 596 SMART serkin_6 311 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1097 596 SUPERFAMILY Protein kinase-like (PK-like) 294 578 IPR011009 -
Vvi2g1097 596 Gene3D Phosphorylase Kinase; domain 1 285 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1097 Vvi-Chr2 17334745 17380288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1097 14 587 Receptor kinase-like Gene Family AT2G35620 74.826 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vvi2g1097 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1097 - - vvi:100264793 1181.39