Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1094 ATGCTCGGAGAACAACAAGGAGAAGGAGAGGAGGTGGAAACAACCCTAGGCGGTGGTGGCGGCGGTAGTGGTGGTGGTTTTGCTGCAAATATGAACATCAACATGAATATAGGGAATTTGAAGATGAAGGAGGAGAGAGTGCCGCAGTGGAGTCACCAGGAAACCAAAGACTTCATCGCCATCCGGGCGGAGCTGGAGAGAGACTTCGCGCTCACCAAGCGGAACAAGACTCTGTGGGAAGCTGTGGCGTCCAAGATGAAGGAGATGGGGTATAAGAGAACTCCTGATCAGTGCAAATGCAAGTGGAAGAATCTTGTTAACCGCTATAAGGGAAAGGAGACATCTGATCCAGAGAATGGTCGACAATGCCCATTCTTTGAGGAGCTCCATGCAATATTTGAAGAGCGAGCAAAGAACATGCAGCGACGACTGCTTGAGTCCGAGGCAGGTTCCATGCAGTCAAGGAAGAGGGCAAGGAGAATCAGTGCAGGAGATCATTCCTCAGATGAGTTCTCAGAAGATGAAGACGATGATGAAGATGACAGTGAAGAGGAGAGACTCCCAAGAAGCAGCAATCCCCGGAAAAGGAAGGCTGAGAGGGAAAGGCCGTTGAGGGCAACGGCATCAGATGTAAAGTCAGTAAGACCACCCAATGCTGCAAATATCAGTAGTGCTAGTAGTATCCCGGAAATGCTTAAGGAATTTTTCCAGCAGCAGCAGAGGATGGAGATGCAGTGGAGGGAGGCCATGGAGAGGCGTGCTCAAGAGAGGCAGATGTTTGAGCAGGAATGGCGACAGTCCATGGAGAAGCTTGAGCGGGAGAGGCTGATGGTTGAACAGGCGTGGAGGGAGAGGGAAGAGCAGAGGAGAGCGAGGGAAGAGAGCCGGGCTGAGAAGCGAGATGTCCTCCTCACCACCCTTCTCAACAAGCTCATCCATGAGAATCATCTTTGA 954 0.5136 MLGEQQGEGEEVETTLGGGGGGSGGGFAANMNINMNIGNLKMKEERVPQWSHQETKDFIAIRAELERDFALTKRNKTLWEAVASKMKEMGYKRTPDQCKCKWKNLVNRYKGKETSDPENGRQCPFFEELHAIFEERAKNMQRRLLESEAGSMQSRKRARRISAGDHSSDEFSEDEDDDEDDSEEERLPRSSNPRKRKAERERPLRATASDVKSVRPPNAANISSASSIPEMLKEFFQQQQRMEMQWREAMERRAQERQMFEQEWRQSMEKLERERLMVEQAWREREEQRRAREESRAEKRDVLLTTLLNKLIHENHL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1094 317 CDD GT1 48 113 - -
Vvi2g1094 317 MobiDBLite consensus disorder prediction 147 228 - -
Vvi2g1094 317 MobiDBLite consensus disorder prediction 214 228 - -
Vvi2g1094 317 MobiDBLite consensus disorder prediction 185 208 - -
Vvi2g1094 317 ProSiteProfiles Myb-like domain profile. 50 106 IPR001005 -
Vvi2g1094 317 SMART sant 46 108 IPR001005 -
Vvi2g1094 317 Coils Coil 261 281 - -
Vvi2g1094 317 PANTHER FI21293P1 32 312 - -
Vvi2g1094 317 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g1094 317 Gene3D - 50 111 - -
Vvi2g1094 317 MobiDBLite consensus disorder prediction 169 184 - -
Vvi2g1094 317 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
Vvi2g1094 317 MobiDBLite consensus disorder prediction 147 168 - -
Vvi2g1094 317 Pfam Myb/SANT-like DNA-binding domain 49 132 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1094 Vvi-Chr2 17306235 17308852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1094 45 317 Trihelix Transcription Factor Family AT2G38250 43.431 2.73e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi2g1094 Myb_DNA-bind_4 9e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1094 - - vvi:100259610 471.085