Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1089 ATGGATAGTAATTATGATCTCTTGGAGGAGCTCTTCAACGTCGAATTGGAGCTTCAAGACGTCCAAGACCAGATTAAGAATTTGCTTGATCGGCAAGAGAAGTTGCATGAGAGACAATCTGAACTGAAAACCCTGTTGGAAGCATGTAAAGGATCAGGAAGCCCTGTAAAGGATGGCGCTTCTGTTGCAGTAGAGAACTGGTCAGGGCCATTTGACTGGGATGCTCAAGCAGATGATGTTAGGTTCAATATTTTTGGCATATCCACATATCGTGCAAACCAGCGTGAGATTATAAATGCAGTCATGAGTGGAAGGGATGTTCTGGTGATCATGGCTGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGGTGATGGGATTGGCTGCTTTAGGAATCCCAGCATACATGTTGACATCTACTACTAGCAAGGAAGATGAGAAGTTCATATACAAGGCACTGGAGAAAGGCGATGGAGACCTTAAAATACTGTATGTCACACCTGAAAAGATATCAAAGAGCAAGAGATTCGTGTCAAAACTTGAAAAGTGTCATCATTCTGGTTGTCTCTCCCTCATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTGCCACAGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTACATGGTACGCGAAAAGTCATCTGTTGGAAGGGTGGTTATTGATGAAATTGCTGAATATATTCAAGAATCATATCCAAATAATGAATCTGGAATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTCGCAAAGGAATTACGTGAAAGAGGAATTTCAGCTGATTATTATCACGCAGATATGGATGTGAATGCTCGTGAGAGAGTTCATCTTCGGTGGAGCAATAGCAAGTTGCAGGTCATTGTTGGTACGGTGGCCTTTGGTATGGGAATTAACAAGCCTGATGTCAGGTTTGTCATCCATCACAGCCTAAGTAAATCAATGGAGACATACTACCAGGAAAGTGGTCGAGCTGGAAGAGATGGACTCCCTTCTGAATGCCTGCTCTATTTTAGGCCTGGGGATGTACCTAGGCAGAGTTCAATGGTCTTCTATGAGAATTCTGGATTGCAAAATCTCTATGACATAGTACAATATTGTCAGTCTAAAAGGGAATGTCGTCGAAATGCTTTTTTTCGACATTTTGCTGAGCCATTGCAAGACTGCAACGGGATGTGTGATAACTGTGCATTTTCAACTGAGGTCAAGGAAGTTGATGTTTCCTGTCTTGCAAAAGCTATGATTTCTTTGCTGCAAGATATGCAAGACAACGATCAGAGATTAACAATGTTGCAAATGGTGGACAAGATGAAGGTTAAGAATAAGGACCTAGGTTCTGACCTAAGGAAAGAGGAAATAGAGCACCTTGTGATTCAGCTTATACGGGATCGCGTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCTACAAATGCTTACGTGACATTGGGACTATTGTGGAAGCAAGTATCGCATGGAAAAAGGATTGTTAAGCTTGAGATTTCTACCAAAGTGAAGACTAAGACTGGTAACATGAAATCATCCAAACGCAGCCTGACATCTTCGGGTTTGGAGTTGAAGCTTGATGAGCTACGAAAGGAACTCTCTTCCACTCATGGAGGAATATTCCCTCATTCTGTGTTGTCTACACAACAGATTAGCATCCTCAGTGCCCAGAAACCAACTTCAATTCTAGAGTTAGAGACAATGATTGGAAAGCTGAAGACAGAGAAGTATGGGAGTAAGATTCTTGAAGAGATTGCGAAGTACACCGAGACAGAGCAGCCCGAAAATGTTCCTCCTGATGACAGTACGTTAGGTGAAGGGCAAGGCAGTGAAAAGAAACCTACTAAGAGATTGAAGACTGATGAAGCGCAAGGCAGTGAAAAGAAACCTACAAAGAGGTTGAAGACTGATGAAGGGCAAGGCAGTGAAAACAGGGCTCCCAAAAGGCTGAAGTCCAATAAGGCAGTGGTTCTGATTGAGAGCAGTGGAGATGAAACATGA 2244 0.4251 MDSNYDLLEELFNVELELQDVQDQIKNLLDRQEKLHERQSELKTLLEACKGSGSPVKDGASVAVENWSGPFDWDAQADDVRFNIFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQDQVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEKISKSKRFVSKLEKCHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPVVALTATATKKVQNDLMEMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEYIQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVQYCQSKRECRRNAFFRHFAEPLQDCNGMCDNCAFSTEVKEVDVSCLAKAMISLLQDMQDNDQRLTMLQMVDKMKVKNKDLGSDLRKEEIEHLVIQLIRDRVLKEEFQHTAYATNAYVTLGLLWKQVSHGKRIVKLEISTKVKTKTGNMKSSKRSLTSSGLELKLDELRKELSSTHGGIFPHSVLSTQQISILSAQKPTSILELETMIGKLKTEKYGSKILEEIAKYTETEQPENVPPDDSTLGEGQGSEKKPTKRLKTDEAQGSEKKPTKRLKTDEGQGSENRAPKRLKSNKAVVLIESSGDET* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1089 747 MobiDBLite consensus disorder prediction 669 747 - -
Vvi2g1089 747 CDD DEXHc_RecQ1 73 280 - -
Vvi2g1089 747 SMART ultradead3 86 289 IPR014001 -
Vvi2g1089 747 ProSiteProfiles HRDC domain profile. 597 676 IPR002121 GO:0003676
Vvi2g1089 747 MobiDBLite consensus disorder prediction 687 731 - -
Vvi2g1089 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Vvi2g1089 747 PANTHER DNA HELICASE RECQ FAMILY MEMBER 69 663 - -
Vvi2g1089 747 Gene3D - 481 582 IPR036388 -
Vvi2g1089 747 FunFam ATP-dependent DNA helicase 481 581 - -
Vvi2g1089 747 Pfam HRDC domain 606 666 IPR002121 GO:0003676
Vvi2g1089 747 Pfam Helicase conserved C-terminal domain 308 407 IPR001650 -
Vvi2g1089 747 NCBIfam RecQ family ATP-dependent DNA helicase 83 510 IPR004589 GO:0004386|GO:0006310
Vvi2g1089 747 Gene3D - 54 280 IPR027417 -
Vvi2g1089 747 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Vvi2g1089 747 CDD SF2_C_RecQ 281 417 - -
Vvi2g1089 747 Coils Coil 11 38 - -
Vvi2g1089 747 Pfam RecQ zinc-binding 420 476 IPR032284 -
Vvi2g1089 747 SMART helicmild6 327 408 IPR001650 -
Vvi2g1089 747 FunFam ATP-dependent DNA helicase 601 671 - -
Vvi2g1089 747 Gene3D HRDC domain 601 671 IPR044876 -
Vvi2g1089 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Vvi2g1089 747 Gene3D - 281 477 IPR027417 -
Vvi2g1089 747 FunFam ATP-dependent DNA helicase 281 477 - -
Vvi2g1089 747 FunFam ATP-dependent DNA helicase 53 280 - -
Vvi2g1089 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1089 Vvi-Chr2 17148473 17187066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1089 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.274 4.64e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1089 K10899 - vvi:100256266 1474.53