Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1077 ATGTCCCTTCTGAGTAGGTTCTTTTACAGAAGACCCCCTGATGGCTTGCTTGAATTTGTTGATAGAGTGTATGTTTTTGATTCATGCTTTTCGACTGAAGTTTTGCCCAATGGGATGTACCAAATATACTTGCATGAAATTATAAACGAGTTACATGAGCAATACCCCGATTCATCCTTTCTTGCCTTCAATTTTCGGGAAGGTGAGAAAAGGAGTCAGTTTGCAGAGATTCTGTGCGAGTATGATGTCACTGTCTTGGACTATCCACGACAATATGAGGGCTGTCCCCTCCTTCCATTGTCTTTGATTCAGCATTTTCTTAGAGTTTGTGGCAGTTGGCTTTCACTTGGGAGTCAGCAGAATATTATTCTGCTCCATTGTGAGAGAGGGGGTTGGCCGCTCTTGGCATTACTTTTAGCTAGCTTCTTGATTTTTAGAAAATTGCACAGTGGTGAACGTAAGACGCTAGAAATCGTCCATCGAGAGGCTCCAAAGGGTTTTTTGCAGCTCTTGTCTCCATTAAACCCATTTCCATCTCAGCTTCGTTATCTCCAGTATGTGGCGAGAAGGAATATATCTCCAGAATGGCCACCTCCTGAGCGAGCTCTTTCTTTGGATTGTGTGTTTCTTCGTGCTATTCCAAGTTTTGATTCACAGAATGGATGCAGGCCAATTATTCGTATTTTTGGTAGAAATCTCCATAGCAAAGGTGGGCTCTCAACCCAAATGCTATTCTCCATGTCCAAGAAGAGGAAAACTATTCGACATTACTGCCAGGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTATGATGTTTCGTGTAATGTTCAATACTGCTTTTATTCGATCCAACATTTTGATGCTAAACTGTGAAAACTTGGACATACTCTGGGACTCAAAGGAGCGGTATCCAAAGGGCTTTCGAGCAGAGGTTCTGTTTGGCGATGTCGAGAGCATCTCTCCTTCAAGAGCACCGACTGAAATTTTAAATGGCGAGGAGCAAGGTGGATTGCCTATTGAAGCCTTTTCTAGGGTTCAAGAACTCTTCAGTGGTGTTGAATGGGTTGACAACAGTGACGATGCTACTTTATGGCTATTGAAACAACTGTCTGTTCTAAATGATGCGAAAGAACTTTCAAGATTTCCAAATAAAGTCAGTTCACGCACATCACCTGCTGACTCAGAAGAAGAAAATAATGCATCTAGTATTGCTGATAGTTTGGATTTTATGGATTCTGAAAAGGTTAATAGCCTGACTAACACAACTGAACCTGCAGATAATTTCCTTGATGATCCCTCATTTCAGGATTCCGCTTCTGATGAAGCAACTGATATTATTCCTAGTCCTCCAGCTGCTTCAAATCAAGCGTCCATTGAAACAGCTATGTCATCTGTTCACCAGCAATCATCAGGTCCTATTGAAGGATCTCCGCCTACCTTACCACCTCCTCCACCTCCTCTACCTCCCTTTGCTATCTCTGGTACAATTGCCCCTCAAGCTGCATCCTTACCATCATCAGCACCACCACCACTGCCCCCACCCTTACCTGGAAGTGCTTTGTCAATGTCCCAATCATATGCTTCCAACAGAAACCTTCTGCCTCCATCCACCTCTACACCACCTCCACCTCCACCTCCACCTATTAGTTCTAATAAAGCGCCGTCACCCCCTCCTCCACCACCTCCTCCACCTCTCCCCAATGTATCTAATGGAAATCCTTTAATGCCTCCCACTCCTGCTAGTAGAGGTCCTCCACCTCCCCCACCACCTCCCCCTCCTCTCCCTGGTGTCTCCAATAGTGATACTTCCATGCTTGCTGGTAGAGGCCCTTCACCTCCTCCTCCTCCTCCACCTCCACCTCCCACCTCCATTTCTTCTAAAGGGCCCCCTCCACCCCCTCCACCTCCAGATTTTTCCTCTTCATCTAGTAATAAGCCAACACTGCCACCTCCACCTCCTCCACCACCTGCTCCACCTCTGCCTATGTTTTCCTCATCGAGTTCAACATCTAGATCTAGTTCAAGTCATGGGGTGCCACCTCCACATCCTCCACCTCCTCCACCTTCTTTGGGTTGTAATCCTAGCAATGCCACTCAACCACCTCTACCCCCACCTCCACCGCCGCTCCCTCCAGGATCCGCCCGACAAGCTTCTTGCCCCCCGTCTCCACCACCAGCACCCAAGCCTCCTAGTGCACCCCCACCTCCCCCTCCTCCTCCACCAGCACCCAAGCCTCCTGGTGCACCCCCACCTCCCCCACCTCCACCACCAACAACCAAGCCTCTTGGTGCCCATCCACCACCACCACCACCACCACCACCCCCTCCAGCACCAAAGCCTCCTGGTGCTCCACCTCCACCACCAAAGCCTCCTAGTGCTCCCCCACCTCCACCACCCAAGCCTCCTGGTGCTCCCCCACCTCCACCACCCAAGCTTCCTGGTGCCCCCGCTCCACCACCAAGTCATGTCACAGTACCAGGTCCACCCCCACCACCTGGAGCAAAGGGCACCAATGCACCCCCACCACCACCAACTGGAAGGGGAAGAGCCTCTTCAGGGTCAGCAAGTCATGGAAGAGGTCGAGGTAGTACAGGCTTTACCACTGCCCCTAAGAAAGCTTCATTAAGGCCCTTGCATTGGGTGAAAGTTACCCGAGCAGTGCAAGGGAGTTTATGGGCTGATTCTCAAAAACAGGAAAATCAGTCAAGGGCCCCTGAAATAGATATATCAGAACTTGAAAGTCTATTTTCAGCGGTTTCTACCTCAGATGGAAAGGGCACTGAAAAAGGTGGAGGTCGACGTGGTTCTAATATCAACAAACCCGAGAAAGTCCAATTGGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTTAACGCAATTTTGGCTTTGGATTCTTCAACCTTGGACATTGATCAGGTTGAGAATCTCATTAAATTTTGTCCTACAAAAGAAGAAATGGAGTTGCTGAAGAATTACCCTGGAGACAAGGCAATGCTTGGAAAGTGTGAGCAGTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAGGTGAAGGACTTAAGGAATAACCTAAATACGATTAATGATGCTGCTAGGGAGGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGGAGCTGCCATAGGATTCAAGTTGGACAGCCTTCTTAAATTGGCTGATACTCGTGCAAGAAACAACAAAATGACTTTAATGCATTACTTGTGTAAGCTCCTTTCTGAGAAATTGTCAGAGTTGTTGGATTTTGACAAGGATCTTGTTCATTTGGAAGCAGCGTCTAAGATTCAATTGAAATCTTTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGGTCTTGAAGAATTTCCTTGACACTGCTGAAGCTGAAGTAAGGTCGCTTATCTCCTTGTATTCTGAAGTGGGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGTGACCCAAATCTTAGTCGTCTTCATTAAGACATTCAACAAGTCACGCGATGATAATGAAAAACAGGCTGATGCTGAAAAGAAGAAATTGGAAAAGGAAGCCATGAAAGAACGGGCAGCGGGTAATTTATCTGCAAGAAAGGAGGGTGTTGATATTGATAGGACAAAACTTAATTTTCAGCATCAGAGGCATAACCCATAA 3954 0.4659 MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTEVLPNGMYQIYLHEIINELHEQYPDSSFLAFNFREGEKRSQFAEILCEYDVTVLDYPRQYEGCPLLPLSLIQHFLRVCGSWLSLGSQQNIILLHCERGGWPLLALLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNISPEWPPPERALSLDCVFLRAIPSFDSQNGCRPIIRIFGRNLHSKGGLSTQMLFSMSKKRKTIRHYCQADCDVIKIDIQCMVQGDVVLECVHLDVDSEREVMMFRVMFNTAFIRSNILMLNCENLDILWDSKERYPKGFRAEVLFGDVESISPSRAPTEILNGEEQGGLPIEAFSRVQELFSGVEWVDNSDDATLWLLKQLSVLNDAKELSRFPNKVSSRTSPADSEEENNASSIADSLDFMDSEKVNSLTNTTEPADNFLDDPSFQDSASDEATDIIPSPPAASNQASIETAMSSVHQQSSGPIEGSPPTLPPPPPPLPPFAISGTIAPQAASLPSSAPPPLPPPLPGSALSMSQSYASNRNLLPPSTSTPPPPPPPPISSNKAPSPPPPPPPPPLPNVSNGNPLMPPTPASRGPPPPPPPPPPLPGVSNSDTSMLAGRGPSPPPPPPPPPPTSISSKGPPPPPPPPDFSSSSSNKPTLPPPPPPPPAPPLPMFSSSSSTSRSSSSHGVPPPHPPPPPPSLGCNPSNATQPPLPPPPPPLPPGSARQASCPPSPPPAPKPPSAPPPPPPPPPAPKPPGAPPPPPPPPPTTKPLGAHPPPPPPPPPPPAPKPPGAPPPPPKPPSAPPPPPPKPPGAPPPPPPKLPGAPAPPPSHVTVPGPPPPPGAKGTNAPPPPPTGRGRASSGSASHGRGRGSTGFTTAPKKASLRPLHWVKVTRAVQGSLWADSQKQENQSRAPEIDISELESLFSAVSTSDGKGTEKGGGRRGSNINKPEKVQLVDLRRAYNCEIMLTKIKIPLPDMLNAILALDSSTLDIDQVENLIKFCPTKEEMELLKNYPGDKAMLGKCEQFFLELMKVPRVESKLRVFSFKITFSSQVKDLRNNLNTINDAAREVKESVKLRQIMQTILTLGNALNQGTARGAAIGFKLDSLLKLADTRARNNKMTLMHYLCKLLSEKLSELLDFDKDLVHLEAASKIQLKSLAEEMQAVSKGLEKVEQELTASVNDGAISAGFQKVLKNFLDTAEAEVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFIKTFNKSRDDNEKQADAEKKKLEKEAMKERAAGNLSARKEGVDIDRTKLNFQHQRHNP* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1077 1317 FunFam Formin-like protein 887 1275 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 558 620 - -
Vvi2g1077 1317 Pfam Formin Homology 2 Domain 891 1263 IPR015425 -
Vvi2g1077 1317 Gene3D Formin, FH2 domain 890 1275 IPR042201 -
Vvi2g1077 1317 PANTHER FORMIN-J 808 1290 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 1269 1311 - -
Vvi2g1077 1317 Gene3D - 197 342 - -
Vvi2g1077 1317 Coils Coil 1068 1088 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 526 540 - -
Vvi2g1077 1317 SMART it6_source 500 1314 IPR015425 -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 403 497 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 872 893 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 498 515 - -
Vvi2g1077 1317 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 1269 1317 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 541 557 - -
Vvi2g1077 1317 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Vvi2g1077 1317 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vvi2g1077 1317 SMART PTEN_C2_2 198 1017 IPR014020 -
Vvi2g1077 1317 Coils Coil 1170 1190 - -
Vvi2g1077 1317 ProSiteProfiles Formin homology-2 (FH2) domain profile. 888 1289 IPR015425 -
Vvi2g1077 1317 Coils Coil 1264 1291 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 941 962 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 403 896 - -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 700 870 - -
Vvi2g1077 1317 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Vvi2g1077 1317 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 187 IPR029021 -
Vvi2g1077 1317 MobiDBLite consensus disorder prediction 631 685 - -
Vvi2g1077 1317 SUPERFAMILY Formin homology 2 domain (FH2 domain) 901 1283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1077 Vvi-Chr2 16854328 16878660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1077 1 431 FH2 protein (formin) Gene Family AT1G31810 78.422 0.0 754