Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g1059 | ATGGGCGTTAATCTGACCGAAGGCGCCATCTCGATGCTTTGCAGCGGCGACGCGCAAGGGTCCGATGTGAAGCCGGTGCTGCAAGTGGCGGACATCAGATTGGTGAATACTCAGCAGCAGAGCAACAGCAACGAAAGGTTTCGGATACTGCTGTCGGATGGGTGCCATCTGCAGCAGGGGATGCTGGCGACGCAGAGGAACGAGTTGGTGAAATCCGGGAGGTTGCAGAAGGGGTCGGTTGTTCAGTTGACTCAGTTTGTCTGCAACGTCATCAAGGATCGCATGATTATTATTATCATTGATTTGGATGTGATACTTGAAAAGTGTGATCCTATTGGGGAACCAAAACAATATGTGCAAGGTGGAACTGCTGGTGGTGTTGCTCCTATTGCAAGAACTTCAGCGCCCATGCCATCCTCAGTGGACCATCCAGGGACAGTGCTGGGAAATCCTCAATCTTTTGGCAATAGTTCACTCACTGGTGGCTCTGCTGCTAAACCAAATATGGCTGGGGTAGCTTCTCCATACCATGCTAATTCTTTTTCCAGCAATCCTGACTCAGGACGATTTGCTGGAACAAATGCACCTCCGATGTACAGCAAAATGCAACCTGACGCTGGAATTCCTGCATCAGCAGCTTCAACTGGATCATATGGTGACCAGAGTACAGGTTTTCGGAACAATAAAGTAGAAGTTTCACGGGCTCCTTATAATGCTCCTGCACGCCAGCCTCAGTCTGCATATCAGCAGCCACCTCCAATGTACACAAATAGAGGACCTGTGGCTAGGAATGAAGCTGCTGCCAGAATAATTCCAATTGCTGCTCTTAATCCTTATCAGGGAAGGTGGACAATTAAGGCCAGAGTTACTGCAAAGGGAGAACTTCGGCACTATAATAATCCTCGGGGTGATGGCAAAGTATTCTCTTTTGATCTTCTGGACTCGGATGGTGGAGAAATTAGGGTAACATGTTTCAATGCTGTGGCTGATCAATTCTACAATCAGATTGAAACTGGTAAAGTGTATTTAATTTCCAAGGGGAGCCTGAAACCTGCTCAAAAAACTTTCAATCACCTTCGCAATGATCATGAGATATTCTTAGAGAGTACATCAACAATCCAGCCTTGCTTTGATGATGACAACTCAATCCCGAGGCAACAATTTCACTTCCGGTCCATCAGTGATGTTGAAAGCATGGAGAACAACAGTGTTGTGGATGTAATTGGTGTGGTCTCTTTTATCAGTCCCTCTGCTTCCATAATGAGGAAAAATGGTACTGAAACTCAGAAGAGAGCCCTCCATTTGAAGGACATGTCTGGCCGAAGTGTTGAATTAACTCTATGGGGAAATTTCTGCAATGCGGAAGGACAAAGGCTGCAAAATATGTGTGATTCTGGGGTATTTCCTGTTCTGGCTGTGAAATCTGCCAGGGTTAATGATTTCAATGGGAAAGCAGTGGGGACTATTTCTACCAGCCAACTGTTCATAGAGCCAGATTTTCCAGAGGCTCGCAAGCTTAAAGAATGGTTTGACAAGGAAGGGAGGAACACCCCTTCTGTCTCTATTTCCAGAGAAGTAACAAGTATGGGCAGAACAGATGTTCGAAAGACTATTTCTCAAATCAAAGATGAGAGGCTAGGGACTTCAGAAAAGCCAGATTGGATTACTGTCTGTGCAACTGTTTCTTTCATAAAAGTTGATAATTTTTGCTATACAGCATGCCCCATTATGATTGGTGATCGTCAATGCAACAAGAAGGTTACGAACAATGGAGATGGGAAATGGCGATGTGAGAGGTGTGATCAGTCTGTTGATGATTGTGACTACAGGTATATTCTTCAGTTCCAGATACAGGACCATACTGGCTTGACATGGGTAACTGCATTCCAGGAATGCGGTGAGGAGATCATGGGCATATCTGCGAAAAATCTGTATTATTTGAAATATGAAGAACAAGATGATGAAAAATTTGGAGAAATCCTACGCGGGGTTCTTTTTACTAAATATTCATTCAAATTGAAAGTGAAGGAGGAGATATTCAGTGATGAACAACGTGTGAAGTCTACTGTTGTCAAAGCAGAGAAGGTAAATTTCTCTTCTGAGTCCCGGTTTCTTTTGGATATGGTGGAGAAGCATAAAGTAGAAGACTCCACTTTTCCCCTCAAATCAGAAAATGTTATTTCCAATGGGGGAATGACTAATCCTGGACTTGGGAATGTTGGAATTAGACAGTCCACACCATCTGTTAACTATTCTGGAAATGCTAGCAATGCTGGTAGAGATTTTGGGTTCCCGGCAAACCAAGGGGTTCAGCATGGGAACCAATATGGTAGCTCTGGTCTTTCTGCAACTGGTTCAACTGGTATGTATCAGAGTTGCAACAGCTGTGGTGGTACTGGCCATAGCTCTTCAAACTGCCCTAGTGTCATGCACTCCCCGAGACAGTCATCAGGAGGGGGCTATGTCAGCAGGGCATCCACTGGCCCAAGTGCTGGAGGCACGACTGGTGAGTGCTATAAATGCCATCAATTCGGACACTGGGCAAGGGACTGTCCTGGTTTGAACACTGGTCCTCCAGCTTATGGAAGCAGTGGTGTCAACTCAGGGAGTTACAGCAGCTTTGCAAAGCAACGGGTTGGCGGCTTTTAA | 2649 | 0.4541 | MGVNLTEGAISMLCSGDAQGSDVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQGGTAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQSTGFRNNKVEVSRAPYNAPARQPQSAYQQPPPMYTNRGPVARNEAAARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDSTFPLKSENVISNGGMTNPGLGNVGIRQSTPSVNYSGNASNAGRDFGFPANQGVQHGNQYGSSGLSATGSTGMYQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCPGLNTGPPAYGSSGVNSGSYSSFAKQRVGGF* | 883 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g1059 | 882 | Gene3D | - | 381 | 520 | IPR012340 | - | |
Vvi2g1059 | 882 | SUPERFAMILY | Nucleic acid-binding proteins | 270 | 383 | IPR012340 | - | |
Vvi2g1059 | 882 | Gene3D | - | 521 | 712 | IPR012340 | - | |
Vvi2g1059 | 882 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 113 | IPR012340 | - | |
Vvi2g1059 | 882 | FunFam | Replication protein A subunit | 382 | 520 | - | - | |
Vvi2g1059 | 882 | MobiDBLite | consensus disorder prediction | 183 | 225 | - | - | |
Vvi2g1059 | 882 | NCBIfam | replication factor-a protein 1 (rpa1) | 228 | 711 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Vvi2g1059 | 882 | MobiDBLite | consensus disorder prediction | 804 | 828 | - | - | |
Vvi2g1059 | 882 | CDD | RPA1N | 8 | 94 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Vvi2g1059 | 882 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 106 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Vvi2g1059 | 882 | CDD | RPA1_DBD_B | 404 | 511 | - | - | |
Vvi2g1059 | 882 | FunFam | Replication protein A subunit | 521 | 712 | - | - | |
Vvi2g1059 | 882 | SUPERFAMILY | Retrovirus zinc finger-like domains | 825 | 857 | IPR036875 | GO:0003676|GO:0008270 | |
Vvi2g1059 | 882 | CDD | RPA1_DBD_A | 276 | 375 | - | - | |
Vvi2g1059 | 882 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 283 | 720 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Vvi2g1059 | 882 | ProSiteProfiles | Zinc finger CCHC-type profile. | 793 | 808 | IPR001878 | GO:0003676|GO:0008270 | |
Vvi2g1059 | 882 | Pfam | Zinc knuckle | 837 | 852 | IPR001878 | GO:0003676|GO:0008270 | |
Vvi2g1059 | 882 | CDD | RPA1_DBD_C | 538 | 711 | IPR047192 | - | |
Vvi2g1059 | 882 | SMART | c2hcfinal6 | 837 | 853 | IPR001878 | GO:0003676|GO:0008270 | |
Vvi2g1059 | 882 | SMART | c2hcfinal6 | 792 | 808 | IPR001878 | GO:0003676|GO:0008270 | |
Vvi2g1059 | 882 | Gene3D | - | 3 | 119 | IPR012340 | - | |
Vvi2g1059 | 882 | Pfam | Replication factor-A C terminal domain | 554 | 705 | IPR013955 | - | |
Vvi2g1059 | 882 | Gene3D | - | 269 | 379 | IPR012340 | - | |
Vvi2g1059 | 882 | Pfam | OB-fold nucleic acid binding domain | 283 | 355 | IPR004365 | GO:0003676 | |
Vvi2g1059 | 882 | FunFam | Replication protein A subunit | 4 | 119 | - | - | |
Vvi2g1059 | 882 | ProSiteProfiles | Zinc finger CCHC-type profile. | 838 | 852 | IPR001878 | GO:0003676|GO:0008270 | |
Vvi2g1059 | 882 | FunFam | Replication protein A subunit | 269 | 379 | - | - | |
Vvi2g1059 | 882 | SUPERFAMILY | Nucleic acid-binding proteins | 535 | 712 | IPR012340 | - | |
Vvi2g1059 | 882 | Gene3D | - | 790 | 857 | - | - | |
Vvi2g1059 | 882 | SUPERFAMILY | Nucleic acid-binding proteins | 388 | 517 | IPR012340 | - | |
Vvi2g1059 | 882 | Pfam | Replication protein A OB domain | 393 | 496 | IPR031657 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi2g1059 | Vvi-Chr2 | 16546148 | 16552676 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi2g1059 | 1 | 820 | Core DNA Replication Machinery Family | AT5G45400 | 55.152 | 0.0 | 915 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g1059 | K07466 | - | vvi:100263039 | 1774.6 |