Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1059 ATGGGCGTTAATCTGACCGAAGGCGCCATCTCGATGCTTTGCAGCGGCGACGCGCAAGGGTCCGATGTGAAGCCGGTGCTGCAAGTGGCGGACATCAGATTGGTGAATACTCAGCAGCAGAGCAACAGCAACGAAAGGTTTCGGATACTGCTGTCGGATGGGTGCCATCTGCAGCAGGGGATGCTGGCGACGCAGAGGAACGAGTTGGTGAAATCCGGGAGGTTGCAGAAGGGGTCGGTTGTTCAGTTGACTCAGTTTGTCTGCAACGTCATCAAGGATCGCATGATTATTATTATCATTGATTTGGATGTGATACTTGAAAAGTGTGATCCTATTGGGGAACCAAAACAATATGTGCAAGGTGGAACTGCTGGTGGTGTTGCTCCTATTGCAAGAACTTCAGCGCCCATGCCATCCTCAGTGGACCATCCAGGGACAGTGCTGGGAAATCCTCAATCTTTTGGCAATAGTTCACTCACTGGTGGCTCTGCTGCTAAACCAAATATGGCTGGGGTAGCTTCTCCATACCATGCTAATTCTTTTTCCAGCAATCCTGACTCAGGACGATTTGCTGGAACAAATGCACCTCCGATGTACAGCAAAATGCAACCTGACGCTGGAATTCCTGCATCAGCAGCTTCAACTGGATCATATGGTGACCAGAGTACAGGTTTTCGGAACAATAAAGTAGAAGTTTCACGGGCTCCTTATAATGCTCCTGCACGCCAGCCTCAGTCTGCATATCAGCAGCCACCTCCAATGTACACAAATAGAGGACCTGTGGCTAGGAATGAAGCTGCTGCCAGAATAATTCCAATTGCTGCTCTTAATCCTTATCAGGGAAGGTGGACAATTAAGGCCAGAGTTACTGCAAAGGGAGAACTTCGGCACTATAATAATCCTCGGGGTGATGGCAAAGTATTCTCTTTTGATCTTCTGGACTCGGATGGTGGAGAAATTAGGGTAACATGTTTCAATGCTGTGGCTGATCAATTCTACAATCAGATTGAAACTGGTAAAGTGTATTTAATTTCCAAGGGGAGCCTGAAACCTGCTCAAAAAACTTTCAATCACCTTCGCAATGATCATGAGATATTCTTAGAGAGTACATCAACAATCCAGCCTTGCTTTGATGATGACAACTCAATCCCGAGGCAACAATTTCACTTCCGGTCCATCAGTGATGTTGAAAGCATGGAGAACAACAGTGTTGTGGATGTAATTGGTGTGGTCTCTTTTATCAGTCCCTCTGCTTCCATAATGAGGAAAAATGGTACTGAAACTCAGAAGAGAGCCCTCCATTTGAAGGACATGTCTGGCCGAAGTGTTGAATTAACTCTATGGGGAAATTTCTGCAATGCGGAAGGACAAAGGCTGCAAAATATGTGTGATTCTGGGGTATTTCCTGTTCTGGCTGTGAAATCTGCCAGGGTTAATGATTTCAATGGGAAAGCAGTGGGGACTATTTCTACCAGCCAACTGTTCATAGAGCCAGATTTTCCAGAGGCTCGCAAGCTTAAAGAATGGTTTGACAAGGAAGGGAGGAACACCCCTTCTGTCTCTATTTCCAGAGAAGTAACAAGTATGGGCAGAACAGATGTTCGAAAGACTATTTCTCAAATCAAAGATGAGAGGCTAGGGACTTCAGAAAAGCCAGATTGGATTACTGTCTGTGCAACTGTTTCTTTCATAAAAGTTGATAATTTTTGCTATACAGCATGCCCCATTATGATTGGTGATCGTCAATGCAACAAGAAGGTTACGAACAATGGAGATGGGAAATGGCGATGTGAGAGGTGTGATCAGTCTGTTGATGATTGTGACTACAGGTATATTCTTCAGTTCCAGATACAGGACCATACTGGCTTGACATGGGTAACTGCATTCCAGGAATGCGGTGAGGAGATCATGGGCATATCTGCGAAAAATCTGTATTATTTGAAATATGAAGAACAAGATGATGAAAAATTTGGAGAAATCCTACGCGGGGTTCTTTTTACTAAATATTCATTCAAATTGAAAGTGAAGGAGGAGATATTCAGTGATGAACAACGTGTGAAGTCTACTGTTGTCAAAGCAGAGAAGGTAAATTTCTCTTCTGAGTCCCGGTTTCTTTTGGATATGGTGGAGAAGCATAAAGTAGAAGACTCCACTTTTCCCCTCAAATCAGAAAATGTTATTTCCAATGGGGGAATGACTAATCCTGGACTTGGGAATGTTGGAATTAGACAGTCCACACCATCTGTTAACTATTCTGGAAATGCTAGCAATGCTGGTAGAGATTTTGGGTTCCCGGCAAACCAAGGGGTTCAGCATGGGAACCAATATGGTAGCTCTGGTCTTTCTGCAACTGGTTCAACTGGTATGTATCAGAGTTGCAACAGCTGTGGTGGTACTGGCCATAGCTCTTCAAACTGCCCTAGTGTCATGCACTCCCCGAGACAGTCATCAGGAGGGGGCTATGTCAGCAGGGCATCCACTGGCCCAAGTGCTGGAGGCACGACTGGTGAGTGCTATAAATGCCATCAATTCGGACACTGGGCAAGGGACTGTCCTGGTTTGAACACTGGTCCTCCAGCTTATGGAAGCAGTGGTGTCAACTCAGGGAGTTACAGCAGCTTTGCAAAGCAACGGGTTGGCGGCTTTTAA 2649 0.4541 MGVNLTEGAISMLCSGDAQGSDVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQGGTAGGVAPIARTSAPMPSSVDHPGTVLGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSNPDSGRFAGTNAPPMYSKMQPDAGIPASAASTGSYGDQSTGFRNNKVEVSRAPYNAPARQPQSAYQQPPPMYTNRGPVARNEAAARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDSTFPLKSENVISNGGMTNPGLGNVGIRQSTPSVNYSGNASNAGRDFGFPANQGVQHGNQYGSSGLSATGSTGMYQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCPGLNTGPPAYGSSGVNSGSYSSFAKQRVGGF* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1059 882 Gene3D - 381 520 IPR012340 -
Vvi2g1059 882 SUPERFAMILY Nucleic acid-binding proteins 270 383 IPR012340 -
Vvi2g1059 882 Gene3D - 521 712 IPR012340 -
Vvi2g1059 882 SUPERFAMILY Nucleic acid-binding proteins 1 113 IPR012340 -
Vvi2g1059 882 FunFam Replication protein A subunit 382 520 - -
Vvi2g1059 882 MobiDBLite consensus disorder prediction 183 225 - -
Vvi2g1059 882 NCBIfam replication factor-a protein 1 (rpa1) 228 711 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi2g1059 882 MobiDBLite consensus disorder prediction 804 828 - -
Vvi2g1059 882 CDD RPA1N 8 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi2g1059 882 Pfam Replication factor-A protein 1, N-terminal domain 5 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi2g1059 882 CDD RPA1_DBD_B 404 511 - -
Vvi2g1059 882 FunFam Replication protein A subunit 521 712 - -
Vvi2g1059 882 SUPERFAMILY Retrovirus zinc finger-like domains 825 857 IPR036875 GO:0003676|GO:0008270
Vvi2g1059 882 CDD RPA1_DBD_A 276 375 - -
Vvi2g1059 882 PANTHER REPLICATION FACTOR A 1, RFA1 283 720 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi2g1059 882 ProSiteProfiles Zinc finger CCHC-type profile. 793 808 IPR001878 GO:0003676|GO:0008270
Vvi2g1059 882 Pfam Zinc knuckle 837 852 IPR001878 GO:0003676|GO:0008270
Vvi2g1059 882 CDD RPA1_DBD_C 538 711 IPR047192 -
Vvi2g1059 882 SMART c2hcfinal6 837 853 IPR001878 GO:0003676|GO:0008270
Vvi2g1059 882 SMART c2hcfinal6 792 808 IPR001878 GO:0003676|GO:0008270
Vvi2g1059 882 Gene3D - 3 119 IPR012340 -
Vvi2g1059 882 Pfam Replication factor-A C terminal domain 554 705 IPR013955 -
Vvi2g1059 882 Gene3D - 269 379 IPR012340 -
Vvi2g1059 882 Pfam OB-fold nucleic acid binding domain 283 355 IPR004365 GO:0003676
Vvi2g1059 882 FunFam Replication protein A subunit 4 119 - -
Vvi2g1059 882 ProSiteProfiles Zinc finger CCHC-type profile. 838 852 IPR001878 GO:0003676|GO:0008270
Vvi2g1059 882 FunFam Replication protein A subunit 269 379 - -
Vvi2g1059 882 SUPERFAMILY Nucleic acid-binding proteins 535 712 IPR012340 -
Vvi2g1059 882 Gene3D - 790 857 - -
Vvi2g1059 882 SUPERFAMILY Nucleic acid-binding proteins 388 517 IPR012340 -
Vvi2g1059 882 Pfam Replication protein A OB domain 393 496 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1059 Vvi-Chr2 16546148 16552676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1059 1 820 Core DNA Replication Machinery Family AT5G45400 55.152 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1059 K07466 - vvi:100263039 1774.6