Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1043 ATGGCATCATCATCGTCTCCTCTAGTATTCTCCGTTAAACGGTGTGCTCCAGAGTTTGTTCGGCCTACAAACCCTACCCCACGAGAGGTGAAGCAGCTTTCTGATTTAGATGATCAAGAAGGCCTTCGCTTTCAAGTTCCTGTGATAATGTTTTACCCAAACAATCCTTTAATGAAAGGAAAAGACCCTGCAAAGGTCATTAAAGAAGCTCTAGGTAAGGCGCTTGTATACTACTACCCATTTGCAGGTAGGCTGATTGAAGGGGATAATAGAAAACTCATGGTGGACTGCACCGGTGAAGGGGTCTTGTTCATTGAAGCCGATGCCGATACCACACTTGAGAATCTTGGTGATTCAATTCAACCAATGTGCCCCTGCTACGAGGAGATTCTGTATGATGTCCCTGGCTCCGGGGAAATTCTTGGTTCCCCTCTTATCTTAATTCAGGTGACCCGATTGAGGTGTGGAGGATTTATATTTGCATTGCGCCTAAACCACACAATGAGTGATGGTCCTGGCTTGGTCCAATTCCTCGACGCCATAAGCGAGATGGCTCAAGGTCTGTCTGTGCCATCTCTGCTGCCCATATGGCAAAGAGAGCTGTTAAATGCCCGAAATCCGCCACGAATTACCCGTATACATCATGAATACGAGGAGGTAACCAATACCAGGGGCACACTAATGACCATGGACGAAAATAATTTGGTTCATCGATCATTCTTCTTTGGCCTCAAGGAGATAAGAGCACTTAGGAACCGACTTCCTGCAAGCCTCGGTGCCTGCTCGACGTTTGAGGTTCTAATAGCGTATGTATGGAGATGCCGCACAATTGCATTTGCAGTAGACCCTGATGAGGTTGTTCGCATTTCATGCTTAATCAATATGCGAGGCAAGCGCGGTTTCGATCTGCCTCCAGGATACTATGGAAATGCTTTTGTTTATCCAGCTTCAATTACTAAGGCTGGAATGCTATGTAAAAACCCATTGGAATATGCGATAAGGTTACTGAAGAAAGCCAAGGCGGAAATGAGCCAAGAGTATGTAAAATCAGTGGCAGATCTTATGGTCATCAAGGGCCGTCCCTCATTTACGCAGCCGGGGAACTATCTTATTTCAGATCTCACACGTGCCGGGTTTGGAGAGATCGACTTCGGGTGGGGAAAGCCAGTCTATGGTGGGATTGCTAGGGCTTTATCTAATATTAGCTTCTGTATGCGGTTCAGGAACAGCAAAGGAGAAGAAGGGAATGTTATACCTATATGCCTGCCTCCGCCAGTCATGGAAAGGTTTGAACAGGAGCTAAAGAGAATGACAAAAGAGGAAGAGCCTGTTAGACTTATTACATCCATGCTGTAA 1356 0.4602 MASSSSPLVFSVKRCAPEFVRPTNPTPREVKQLSDLDDQEGLRFQVPVIMFYPNNPLMKGKDPAKVIKEALGKALVYYYPFAGRLIEGDNRKLMVDCTGEGVLFIEADADTTLENLGDSIQPMCPCYEEILYDVPGSGEILGSPLILIQVTRLRCGGFIFALRLNHTMSDGPGLVQFLDAISEMAQGLSVPSLLPIWQRELLNARNPPRITRIHHEYEEVTNTRGTLMTMDENNLVHRSFFFGLKEIRALRNRLPASLGACSTFEVLIAYVWRCRTIAFAVDPDEVVRISCLINMRGKRGFDLPPGYYGNAFVYPASITKAGMLCKNPLEYAIRLLKKAKAEMSQEYVKSVADLMVIKGRPSFTQPGNYLISDLTRAGFGEIDFGWGKPVYGGIARALSNISFCMRFRNSKGEEGNVIPICLPPPVMERFEQELKRMTKEEEPVRLITSML* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1043 451 Gene3D - 11 217 IPR023213 -
Vvi2g1043 451 PANTHER ACYL TRANSFERASE 4 10 437 - -
Vvi2g1043 451 Gene3D - 218 434 IPR023213 -
Vvi2g1043 451 Pfam Transferase family 13 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1043 Vvi-Chr2 15981429 15983342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1043 20 434 Monolignol Biosynthesis Gene Families AT5G48930 29.698 3.60e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1043 K19861 - vvi:100243166 913.679