Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1034 ATGGAAATTTTAGTGACGGGTATTCTTTATGTTGTATATCCTGTGCAAAAGAGGCATTGCATAAGATCTAATTCCATTTGGCATATGTATTACTTGGAACAAAATCTTCTTCTCTCCACAAATGACAACAATTTAGTACTGAAGATTGCTGATTTTAGATTTGCAAGATCTCTACAACCTAGAGGTCTTGTAGAAACATTGTGTGGTTCACCACTGTACATGGCGCCAAAGATAATGCAACTTCAGAAATATGACGCAAAGAGTGTTGGTGCCATTCTCTTTCAACTTGTGACTGGAAGAACACCATTTACAGGAAACAATCATATACAATTGCTCCAAAACATTGTTAAATATAGTGAATTGCATTTCCCTCCTGATAATAATGATTTGAGTGCTGACTGCAAAGATTTGTGTCAGAAATTGTTGCGCCGCAATCCTGTGGAACGACTAACATTTGAAGAGTTTTTTAACCACCCATTCCTTTCTCAAAAGCAACCAAATGAAGCGTTAAGTAGGAGATCATCAAGAATAATTGACGGGTTTCCTTTGTCTGAATGCAATTCTGTGAGAAAGACAGAGGCAAGTTCTCAAGAGGATTGTATGTCTTTTCCTCTAGATGATGATTCTAGTGGTGCTGAAGGGAGCCCATCATTTTTGAGGAAGAGGTCCTCAATGAAGTCTACCTATGGATTTTCTCCTGATAAAAAAGTTGATATAAGGGAAACAATATTTAACACTCCCAACAACATGGATCTTGCTTCTAAATACAGCAAAGTTGTTCAAGAGTTGTGGATTCATAGGAGGAGTTGGTTGATTAGGATTATGTTTTTGTATCTGGACCCCCAATGGATGTGTCATCTTCCTCGGCTATTGCTTCCAAGCCAAACTTCACAAGGATCCATGGATATAGGAGATGCTTTAGAGCGACCATCAACTCACTGCATAACAAGGATTAAGTCATTGCAGCAATGTGCATCTATCATCACTGAATTGGTAAATGAGAAGAAAACAGGGAGTTCTGGTTTTGATGGCATTTTTGGCTATGGCAGGTTAAAAAAATGGGATCAGTTAGGAGGTCAATTGATGTTGCAAGTTTTAAGAATTATGAAGAATTATGCTAGGCAATTAAATGCATGTTTGGACTTGAAGGTGTGCTCAACGACCAGAAAGGCTCAAGTTGGAAAATGGTGTATGTGGATTATGAGAATGATGTACTTCTTGTTGGGGATGATCCTCAGAATGAGTTTGTTGGTTGTGTCCGCTGCATTAGAATTTTGTCGCCTTCTGAAGTTCAGCAGATGA 1302 0.3848 MEILVTGILYVVYPVQKRHCIRSNSIWHMYYLEQNLLLSTNDNNLVLKIADFRFARSLQPRGLVETLCGSPLYMAPKIMQLQKYDAKSVGAILFQLVTGRTPFTGNNHIQLLQNIVKYSELHFPPDNNDLSADCKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQPNEALSRRSSRIIDGFPLSECNSVRKTEASSQEDCMSFPLDDDSSGAEGSPSFLRKRSSMKSTYGFSPDKKVDIRETIFNTPNNMDLASKYSKVVQELWIHRRSWLIRIMFLYLDPQWMCHLPRLLLPSQTSQGSMDIGDALERPSTHCITRIKSLQQCASIITELVNEKKTGSSGFDGIFGYGRLKKWDQLGGQLMLQVLRIMKNYARQLNACLDLKVCSTTRKAQVGKWCMWIMRMMYFLLGMILRMSLLVVSAALEFCRLLKFSR* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1034 433 FunFam Serine/threonine-protein kinase ATG1c 15 202 - -
Vvi2g1034 433 SMART serkin_6 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1034 433 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1034 433 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 21 344 IPR045269 GO:0004674|GO:0006914
Vvi2g1034 433 Pfam Protein kinase domain 23 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g1034 433 Gene3D Transferase(Phosphotransferase) domain 1 16 203 - -
Vvi2g1034 433 SUPERFAMILY Protein kinase-like (PK-like) 34 188 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1034 Vvi-Chr2 15718423 15722400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1034 23 161 CBL-interacting serine-threonine protein kinases AT2G30360 33.333 1.15e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vvi2g1034 Pkinase 2.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1034 K08269 - vvi:100251048 411.764