LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g1034	ATGGAAATTTTAGTGACGGGTATTCTTTATGTTGTATATCCTGTGCAAAAGAGGCATTGCATAAGATCTAATTCCATTTGGCATATGTATTACTTGGAACAAAATCTTCTTCTCTCCACAAATGACAACAATTTAGTACTGAAGATTGCTGATTTTAGATTTGCAAGATCTCTACAACCTAGAGGTCTTGTAGAAACATTGTGTGGTTCACCACTGTACATGGCGCCAAAGATAATGCAACTTCAGAAATATGACGCAAAGAGTGTTGGTGCCATTCTCTTTCAACTTGTGACTGGAAGAACACCATTTACAGGAAACAATCATATACAATTGCTCCAAAACATTGTTAAATATAGTGAATTGCATTTCCCTCCTGATAATAATGATTTGAGTGCTGACTGCAAAGATTTGTGTCAGAAATTGTTGCGCCGCAATCCTGTGGAACGACTAACATTTGAAGAGTTTTTTAACCACCCATTCCTTTCTCAAAAGCAACCAAATGAAGCGTTAAGTAGGAGATCATCAAGAATAATTGACGGGTTTCCTTTGTCTGAATGCAATTCTGTGAGAAAGACAGAGGCAAGTTCTCAAGAGGATTGTATGTCTTTTCCTCTAGATGATGATTCTAGTGGTGCTGAAGGGAGCCCATCATTTTTGAGGAAGAGGTCCTCAATGAAGTCTACCTATGGATTTTCTCCTGATAAAAAAGTTGATATAAGGGAAACAATATTTAACACTCCCAACAACATGGATCTTGCTTCTAAATACAGCAAAGTTGTTCAAGAGTTGTGGATTCATAGGAGGAGTTGGTTGATTAGGATTATGTTTTTGTATCTGGACCCCCAATGGATGTGTCATCTTCCTCGGCTATTGCTTCCAAGCCAAACTTCACAAGGATCCATGGATATAGGAGATGCTTTAGAGCGACCATCAACTCACTGCATAACAAGGATTAAGTCATTGCAGCAATGTGCATCTATCATCACTGAATTGGTAAATGAGAAGAAAACAGGGAGTTCTGGTTTTGATGGCATTTTTGGCTATGGCAGGTTAAAAAAATGGGATCAGTTAGGAGGTCAATTGATGTTGCAAGTTTTAAGAATTATGAAGAATTATGCTAGGCAATTAAATGCATGTTTGGACTTGAAGGTGTGCTCAACGACCAGAAAGGCTCAAGTTGGAAAATGGTGTATGTGGATTATGAGAATGATGTACTTCTTGTTGGGGATGATCCTCAGAATGAGTTTGTTGGTTGTGTCCGCTGCATTAGAATTTTGTCGCCTTCTGAAGTTCAGCAGATGA	1302	0.3848	MEILVTGILYVVYPVQKRHCIRSNSIWHMYYLEQNLLLSTNDNNLVLKIADFRFARSLQPRGLVETLCGSPLYMAPKIMQLQKYDAKSVGAILFQLVTGRTPFTGNNHIQLLQNIVKYSELHFPPDNNDLSADCKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQPNEALSRRSSRIIDGFPLSECNSVRKTEASSQEDCMSFPLDDDSSGAEGSPSFLRKRSSMKSTYGFSPDKKVDIRETIFNTPNNMDLASKYSKVVQELWIHRRSWLIRIMFLYLDPQWMCHLPRLLLPSQTSQGSMDIGDALERPSTHCITRIKSLQQCASIITELVNEKKTGSSGFDGIFGYGRLKKWDQLGGQLMLQVLRIMKNYARQLNACLDLKVCSTTRKAQVGKWCMWIMRMMYFLLGMILRMSLLVVSAALEFCRLLKFSR*	434

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi2g1034	433	FunFam	Serine/threonine-protein kinase ATG1c	15	202	-	-
Vvi2g1034	433	SMART	serkin_6	1	161	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi2g1034	433	ProSiteProfiles	Protein kinase domain profile.	1	161	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi2g1034	433	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	21	344	IPR045269	GO:0004674\|GO:0006914
Vvi2g1034	433	Pfam	Protein kinase domain	23	161	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vvi2g1034	433	Gene3D	Transferase(Phosphotransferase) domain 1	16	203	-	-
Vvi2g1034	433	SUPERFAMILY	Protein kinase-like (PK-like)	34	188	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g1034	Vvi-Chr2	15718423	15722400	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g1034	23	161	CBL-interacting serine-threonine protein kinases	AT2G30360	33.333	1.15e-16	79.7

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Vvi2g1034		Pkinase	2.8e-23	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g1034	K08269		-	vvi:100251048	411.764

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