Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1017 ATGCTACCTAGTGTTGTTGGTTATTTCTTGGAGGAGCATGGTGAATTCATGGAGGTTGTGGGATTTGAAGCGGCCCCGGCACCTGTGGAGACTGAAACTGAAGCAAAAAGTGCTTTGTTGCATGACAAGGAGACTGGGAAGTTCATTCAACAACCTGGAGTTACCGAGCTTATAAAATTTGGTTCTCATGGAGATGAACCTGTCAAAGGGAAGGGTCCAACTGGATTCCACTCGCGTTCAAGAGGCCGTGGTGTCAGATGCAGCATCCGCGGAAGCAGATTAGATGGCCATGAGAATGAGGGAGAAAGTGCAGCTGCATCAACAGATCAGATAGAGAGTCCCCATGAGGAAAATGCCCCTGAGAAGAGAAAGTCAAGCTCCAGTAAAACCGATGCTCCTCTTCTCTTGGACCTGCAGGTGGAGGAGATAAAATATGTGCTTGAAGTGAAGACGTTTCAGAGGATAGGGCTTCTGATGCTTTCTACTCTTCAGTGGAAGAAGCCCGATGCAGCCAAAGCTTTTGGTTCATTCCTTGATGAAGATCAGATGGCTGCTAATCTTGTGAAAAATGGTCAAATGGTAGTGGGCATCAATACAGTGTTCATGCAGACACATATTGGGGAAGTGTCACGCCCATACATATGCTCTGAGATGATGGCTCATGGAGTGTTACTGGTGGGGCATGGTTCAACAGGCCATGATCCCATCCGGATGAAGGGCAGGCCTTACTGGATCGTAAAGAACTCATGGGATGAGAAGTGGGGAGAGAATGGACCCTACAAAAGCTACAGGAGACCGCTTCTTTGCATGACCACCTAG 819 0.4799 MLPSVVGYFLEEHGEFMEVVGFEAAPAPVETETEAKSALLHDKETGKFIQQPGVTELIKFGSHGDEPVKGKGPTGFHSRSRGRGVRCSIRGSRLDGHENEGESAAASTDQIESPHEENAPEKRKSSSSKTDAPLLLDLQVEEIKYVLEVKTFQRIGLLMLSTLQWKKPDAAKAFGSFLDEDQMAANLVKNGQMVVGINTVFMQTHIGEVSRPYICSEMMAHGVLLVGHGSTGHDPIRMKGRPYWIVKNSWDEKWGENGPYKSYRRPLLCMTT* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1017 272 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 219 229 IPR025660 -
Vvi2g1017 272 MobiDBLite consensus disorder prediction 114 128 - -
Vvi2g1017 272 Pfam Papain family cysteine protease 179 263 IPR000668 GO:0006508|GO:0008234
Vvi2g1017 272 Gene3D Cysteine proteinases 105 269 - -
Vvi2g1017 272 MobiDBLite consensus disorder prediction 60 130 - -
Vvi2g1017 272 SUPERFAMILY Cysteine proteinases 174 263 IPR038765 -
Vvi2g1017 272 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 178 264 IPR013128 GO:0008234
Vvi2g1017 272 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1017 Vvi-Chr2 15341982 15343199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1017 129 166 Core Cell Cycle Gene Families AT4G34160 68.421 1.54e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1017 K01373 - vvi:100264346 164.081