Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1010 ATGCCGGTTGCAGAAAGCTACAAGGATGGGTGGGCTAGGGTCAGGCGTCGGGTTGAGAATCGTACATGGATTGGGATGGATTTGGAAGGCTTTGTGAGGACTTTACCTTGGACTAGTGGGGAAGTGTGCTTGAAGTATCAGTTACCGGGTGAAGATCTCGACGCTTTGATCTCGATTACCAACGATGAGGATCTTGAACACATGATGCTCGAGCACGATCGATTGTGTCGCCCATCCAACAAGCAGGCTAGACTCGGGTTATTTCTCTTCCCGCTGACCCCTCCTGCATCCACCAGTTTCGGTTCCAACGAGACCAAATCGGAGCGGCAGTGGTTCGTGGACTCATTGAATTCTGTGCAGATCCAGCCTCTGGAAGGTTCTTCACTTCAGGCGGCGGCCTCCGAGACTAATCCGGATTTTCTGTTTGGGTTGGATAAAGGGCTCGCTCCGCCTCCCCTCGTGAAATTGCTTCCCAAGGATTATTTAGTGAGATCGGATCCAGGATCGGAAATTCCTTATAAATTATAA 528 0.5057 MPVAESYKDGWARVRRRVENRTWIGMDLEGFVRTLPWTSGEVCLKYQLPGEDLDALISITNDEDLEHMMLEHDRLCRPSNKQARLGLFLFPLTPPASTSFGSNETKSERQWFVDSLNSVQIQPLEGSSLQAAASETNPDFLFGLDKGLAPPPLVKLLPKDYLVRSDPGSEIPYKL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1010 175 PANTHER OS05G0427100 PROTEIN-RELATED 40 155 - -
Vvi2g1010 175 SUPERFAMILY CAD & PB1 domains 37 99 - -
Vvi2g1010 175 SMART PB1_new 2 92 IPR000270 GO:0005515
Vvi2g1010 175 Pfam PB1 domain 42 91 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1010 Vvi-Chr2 15143097 15143624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1010 40 130 MAP Kinase Kinase Kinase AT5G57610 39.362 1.30e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1010 - - vvi:100852522 350.517