Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g1003 ATGCTGACGTGTATATCGTGCTCGAAGCAAACGGAGGAGGATGGGAGAGGAGAGGAGGGCAGTGGAGGTGGGGCGCGTGGGACACCAAGTACAAAAGAAGCCGTCAAAAGCCTGACGGCGCAGATCAAGGATATGGCCTTGAAATTCTCGGGTGCTTACAGGCAATGCAAGCCCTGCACTGGGTCCAGCAGCTACAAGAAGGGACACCGGCCTTATCCTGACTTTGATACCATTTCAGAAGGGGTTCCGTACCCCTACTTAAGGCCGGGGAGCTCAAGCTCAACGCCTGCATGGGATTTCACAACCAGCAGCCATAACCCTGGTGCAGGGTCTGACTCAAGGTTCACTGGGGTGTTGAGAGGTGATCAGACGCCCGGAGGGGTGTCCATCTCGGCTCAGTCTTGTGATGTTGTGCTGGAGGATGAGGATGAGCCCAAAGAGTGGATGGCTCAGGTTGAGCCTGGAGTTCACATCACTTTTGTGTCCCTCCCCCATGGGGGAAATGACTTAAAACGGATCCGTTTCAGCCGGGAGATGTTTAATAAATGGCAAGCTCAGCGATGGTGGGGAGAGAATTATGACCGGATCATGGAGCTGTACAATGTCCAGAGATTCAACCGCCAAGCTCTACACACTCCTCCTAGGTCTGAGGACGAGAGAGATTCATCTTACTCGAGGATGGGATCGGCAAGGGAAAGCCCTATGACTCCATCACTAAACAAGGAATGGATTCCGAGGAACTATTATAAACCATCTGGAAGTAAAGGGTACTTCCCATCTGAACCTTCAGATCAGTATGGGAGTCATCAATACAATGCGGGCTCAAGTGCTTATGGCACAGGCGGCCCAAGGGGCGAGACATCTTCCATGGATGCTTCACGGACAACAACCTCATCTAGGGATGAGGCGTCAGTTTCCATTAGCAATGCCAGTGACATGGAGACTGAGTGGGTTGAGCAAGATGAACCAGGAGTCTACATTACCATCAGACAGTTGGCTGATGGCACAAGGGAGCTTCGGCGCGTCAGATTCAGCCGTGAAAGATTTGGTGAGGTCCATGCAAAGACGTGGTGGGAAGAGAATCGAGAGAGAATACAAGCTCAATACCTCTAA 1113 0.5193 MLTCISCSKQTEEDGRGEEGSGGGARGTPSTKEAVKSLTAQIKDMALKFSGAYRQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYLRPGSSSSTPAWDFTTSSHNPGAGSDSRFTGVLRGDQTPGGVSISAQSCDVVLEDEDEPKEWMAQVEPGVHITFVSLPHGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALHTPPRSEDERDSSYSRMGSARESPMTPSLNKEWIPRNYYKPSGSKGYFPSEPSDQYGSHQYNAGSSAYGTGGPRGETSSMDASRTTTSSRDEASVSISNASDMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVHAKTWWEENRERIQAQYL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g1003 370 Pfam Transcription factor BRX N-terminal domain 28 59 IPR027988 -
Vvi2g1003 370 ProSiteProfiles BRX domain profile. 315 370 IPR013591 -
Vvi2g1003 370 MobiDBLite consensus disorder prediction 7 33 - -
Vvi2g1003 370 MobiDBLite consensus disorder prediction 211 226 - -
Vvi2g1003 370 MobiDBLite consensus disorder prediction 210 313 - -
Vvi2g1003 370 MobiDBLite consensus disorder prediction 258 313 - -
Vvi2g1003 370 ProSiteProfiles BRX domain profile. 146 201 IPR013591 -
Vvi2g1003 370 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 370 IPR044532 -
Vvi2g1003 370 Pfam Transcription factor regulating root and shoot growth via Pin3 314 369 IPR013591 -
Vvi2g1003 370 Pfam Transcription factor regulating root and shoot growth via Pin3 146 200 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g1003 Vvi-Chr2 14820631 14824363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g1003 1 370 Major Intrinsic Protein MIP AT1G31880 67.287 8.05e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g1003 - - vvi:100246485 730.709