Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0992 ATGGAGAAGAAAAGTGGCATCTGGTTCCCACTCCGAGCAGGTTTGAGTAGATGCCGCAAAAGCTGTAGATTGAGATGGTTCAACTATTTAAAGCCAAATATTAAGAGAGGAAAATTTGCATCAGATGAAGTCGATCTCATGATTAGACTTCATAAGCTGTTGGGAAACAGATGGTCCTTGATTGCCGGCAGACTTCCAGGGAGGACTGCGAATGATGTCAAGAATTACTGGCACCATCATCGCTTCAGGAAGATGGTTCCCATCCAGGAAAAAGGGAAAGATAAAGCCCAAACCAATTCTGAAAACACTCTGATAAAGCCTAAGCCTTGCAAACTCTTTCTAGGGTTCACATTCAAAACTACAGCTGTGGATGCTTATGAGACACAAGGCAGTACTTGTAGTGAGCTGCAACCCACACTGGTCCAACCAAACCAGGATATTTTATGGTGGGAAAGCCTATTCGCTGACCATACCATTGAAGATCAGGAGCTTATTGCCAGCCTCTTGGCTGACGAAACTGCATCAGCTGTAGATACCAATGGAGGTGGGAATTATGATTTTCCTTTTGAAATGGGCCTCATTGATGAAGTCATGAGATAA 600 0.4367 MEKKSGIWFPLRAGLSRCRKSCRLRWFNYLKPNIKRGKFASDEVDLMIRLHKLLGNRWSLIAGRLPGRTANDVKNYWHHHRFRKMVPIQEKGKDKAQTNSENTLIKPKPCKLFLGFTFKTTAVDAYETQGSTCSELQPTLVQPNQDILWWESLFADHTIEDQELIASLLADETASAVDTNGGGNYDFPFEMGLIDEVMR* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0992 199 SMART sant 35 83 IPR001005 -
Vvi2g0992 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 85 IPR017930 -
Vvi2g0992 199 ProSiteProfiles Myb-like domain profile. 31 81 IPR001005 -
Vvi2g0992 199 CDD SANT 42 80 IPR001005 -
Vvi2g0992 199 Gene3D - 38 108 - -
Vvi2g0992 199 SUPERFAMILY Homeodomain-like 16 81 IPR009057 -
Vvi2g0992 199 FunFam Transcription factor MYB113 38 110 - -
Vvi2g0992 199 Gene3D - 4 35 - -
Vvi2g0992 199 Pfam Myb-like DNA-binding domain 36 79 IPR001005 -
Vvi2g0992 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0992 Vvi-Chr2 14313417 14314408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0992 6 177 MYB Transcription Factor Family AT1G66370 44.231 6.86e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi2g0992 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0992 - K09422 vvi:100244722 417.542