Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0991 ATGGAGAGCTTAGGAGTTAGAAAGGGTGCATGGACCCAAGAAGAGGATGTTCTCCTGAGGAAATGCATTGAGAAATATGGAGAAGGAAAGTGGCATCTGGTTCCCCTCCGAGCAGGGTTGAATAGATGCCGAAAAAGCTGCAGGTTGAGATGGCTCAATTATTTGAAGCCGGATATCAAGAGAGGAGAGTTTGCATTAGACGAGGTTGATCTCATGATTAGGCTTCACAATTTGTTGGGGAACAGATGGTCCTTGATTGCGGGTAGGCTTCCAGGGAGGACTGCTAATGATGTCAAGAACTATTGGCATGGTCACCACTTGAAAAAGAAGGTTCAGTTCCAGGAAGAAGGGAGAGATAAACCCCAAACACATTCTAAAACCAAAGCTATAAAGTCTCGCAAGCCTCTGGACAGAAGAAACTGCAACACAGACAAAGGGACCCATGGATGGTATGGTAGAACAAATCCAGGGAGGTGA 477 0.4591 MESLGVRKGAWTQEEDVLLRKCIEKYGEGKWHLVPLRAGLNRCRKSCRLRWLNYLKPDIKRGEFALDEVDLMIRLHNLLGNRWSLIAGRLPGRTANDVKNYWHGHHLKKKVQFQEEGRDKPQTHSKTKAIKSRKPLDRRNCNTDKGTHGWYGRTNPGR* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0991 158 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vvi2g0991 158 Pfam Myb-like DNA-binding domain 61 103 IPR001005 -
Vvi2g0991 158 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vvi2g0991 158 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 59 IPR017930 -
Vvi2g0991 158 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Vvi2g0991 158 Gene3D - 63 139 - -
Vvi2g0991 158 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vvi2g0991 158 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi2g0991 158 SMART sant 7 57 IPR001005 -
Vvi2g0991 158 SMART sant 60 108 IPR001005 -
Vvi2g0991 158 FunFam Myb transcription factor 8 60 - -
Vvi2g0991 158 CDD SANT 67 103 IPR001005 -
Vvi2g0991 158 CDD SANT 10 55 IPR001005 -
Vvi2g0991 158 Gene3D - 8 60 - -
Vvi2g0991 158 FunFam Transcription factor MYB113 63 135 - -
Vvi2g0991 158 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 129 - -
Vvi2g0991 158 MobiDBLite consensus disorder prediction 112 126 - -
Vvi2g0991 158 MobiDBLite consensus disorder prediction 112 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0991 Vvi-Chr2 14308601 14309283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0991 5 109 MYB Transcription Factor Family AT1G66370 80.952 4.99e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi2g0991 Myb_DNA-binding 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0991 - K09422 vvi:100853472 339.732