Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0990 ATGGAGAGCTTAGGAGTTAGAAAAGGTGCATGGAGCCAGGAAGAAGTTCTCCTTAGGAAATGCGTTGAGAAATATGGAGAAGGAAAGTGGCATCTGTTTCGTTTTCTTGAACTTCCAGGGAGGACTGCTAATGATGTCAAGAATTATTGGCATACTCACCACTTCAAAAAGAAGCCTTGGCCTTACAAGTTCTCCAAAACCTTGCCAAGGTTTGAACTGAAAACTAAAGCTGTGGATACTCTTGACACACAAGTTAGTGCTTCTAGTAAGCCATCATCCACGTCACAACAACCAAATGATGACATCATATGGTGGGAAAGCCTTTTAGATGGCCATGCTCAAAGGGATCAAGAAACTGACTTTTCGACTCGATGTTCTGGAGAGATGCTTATCTCAAGCCTCTGGACAGAAGAAACTGCAACAGAGACAACGGGAACCACAGATTGTATGGTGGAACAAATCCAGGGAGGCGAGGGTGATTTTCCATTCTCGGATACACCCAACACACAAGCAAAAGATCTGATGTGA 528 0.4375 MESLGVRKGAWSQEEVLLRKCVEKYGEGKWHLFRFLELPGRTANDVKNYWHTHHFKKKPWPYKFSKTLPRFELKTKAVDTLDTQVSASSKPSSTSQQPNDDIIWWESLLDGHAQRDQETDFSTRCSGEMLISSLWTEETATETTGTTDCMVEQIQGGEGDFPFSDTPNTQAKDLM* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0990 175 MobiDBLite consensus disorder prediction 156 175 - -
Vvi2g0990 175 SMART sant 7 56 IPR001005 -
Vvi2g0990 175 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Vvi2g0990 175 CDD SANT 10 53 IPR001005 -
Vvi2g0990 175 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
Vvi2g0990 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 58 IPR017930 -
Vvi2g0990 175 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 37 114 - -
Vvi2g0990 175 Gene3D - 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0990 Vvi-Chr2 14288038 14289093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0990 5 111 MYB Transcription Factor Family AT1G66370 27.317 2.52e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi2g0990 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0990 - K09422 vvi:100233098 196.823