Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0989 ATGGAGAGTTTGGGAGTTACAAAGGGAAAATGGACTCGGGAAGAAGATATTCTTTTAAGAAAATGTGTTGAGAATTATGGAGAAGAAAAGTGGCATCTGGTTCCACTCCGAGCAGGTTTGAGTAGATGCCGCAAAAGCTGTAGATTGAGATGGTTCAACTATTTAAAGCCAAATATTAAGAGAGGAAAATTTGCATCAGATGAAGTCGATCTCATGATTAGACTTCATAAGCTGTTGGGAAACAGATGGTCCTTGATTGCCGGCAGACTTCCAGGGAGGACTGCGAATGATGTCAAGAATTACTGGCACCATCATCGCTTCAAGAAGATGGTTCCCATCCAGGAAAAAGGGAAAGATAAAGCCCAAACCAATTCTGAAAACACTCTGATAAAGCCTAAGCCTTGCAAACTCTTTCTAGGGTTCACATTCAAAACTACAGCTGTGGATGCTTCTGAGACACAAGGCAGTACTTGTAGTGAGCTGCAACCCACACTGGTCCAACCAAACCAGGATATTTTATGGTGGGAAAGCCTATTCGCTGACCATACCATTGAAGATCAGGAGCTTATTGCCAGCCTCCTGGCTGACGAAACTGCATCAGCTGTAGATACCAATGGAGGTGGGAATTTTGATTTTCCTTTTGAAATGGGCCTCATTGATGAAGTCATGAGATAA 675 0.4281 MESLGVTKGKWTREEDILLRKCVENYGEEKWHLVPLRAGLSRCRKSCRLRWFNYLKPNIKRGKFASDEVDLMIRLHKLLGNRWSLIAGRLPGRTANDVKNYWHHHRFKKMVPIQEKGKDKAQTNSENTLIKPKPCKLFLGFTFKTTAVDASETQGSTCSELQPTLVQPNQDILWWESLFADHTIEDQELIASLLADETASAVDTNGGGNFDFPFEMGLIDEVMR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0989 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 59 IPR017930 -
Vvi2g0989 224 FunFam Transcription factor MYB113 63 135 - -
Vvi2g0989 224 SMART sant 7 57 IPR001005 -
Vvi2g0989 224 SMART sant 60 108 IPR001005 -
Vvi2g0989 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Vvi2g0989 224 FunFam Myb transcription factor 8 60 - -
Vvi2g0989 224 Gene3D - 62 133 - -
Vvi2g0989 224 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vvi2g0989 224 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi2g0989 224 CDD SANT 67 105 IPR001005 -
Vvi2g0989 224 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vvi2g0989 224 CDD SANT 10 55 IPR001005 -
Vvi2g0989 224 Gene3D - 7 60 - -
Vvi2g0989 224 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Vvi2g0989 224 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vvi2g0989 224 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0989 Vvi-Chr2 14280776 14281843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0989 5 202 MYB Transcription Factor Family AT1G66370 47.598 2.67e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi2g0989 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0989 - K09422 vvi:100249851 468.388