Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0988 ATGGAATCTGGGGTGAAGCATGCTATGGTGGTGAAAGTTATGGGTCGAACTAGCTCAAGAGGTCAGGTGACCCAGATGAGAGTGAAGTTTTTGGATGACCAGAATAGGTTTATCATGAGGAATGTGAAGGGACCTGTCAGAGAAGGAGACATCCTCACCCTGCTTGAGTCTGAGAGGGAGGCCAGAAGGTTGCGTTGA 198 0.4899 MESGVKHAMVVKVMGRTSSRGQVTQMRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0988 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vvi2g0988 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Vvi2g0988 65 Gene3D - 1 65 IPR012340 -
Vvi2g0988 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vvi2g0988 65 Pfam Ribosomal protein S28e 5 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vvi2g0988 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Vvi2g0988 65 FunFam 40S ribosomal protein S28 1 65 - -
Vvi2g0988 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0988 Vvi-Chr2 14274907 14275104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0988 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 83.077 2.81e-33 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0988 K02979 - vvi:100249859 103.605