Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0986 ATGGAGAGTTTGGGAGTTAGAAAGGGAAAATGGACTCGGGAAGAAGATTTTCTTTTAAGAAAATGTGTTGAGAAATATGGAGAAGAAAAATGGCATTTGGTTCCACTCCGAGCAGGTTTGAGTAGATGCCGCAAAAGCTGTAGATTGAGATGGTTCAACTATTTAAAGCCAAATATTAAGAGAGGAAAATTTGCATCAGATGAAGTCGATCTCATGATTAGACTTCATAAGCTGTTGGGAAACAGATGGTCCTTGATTGCCGGCAGACTTCCAGGGAGGACTGCGAATGATGTCAAGAATTACTGGCACCATCATCGCTTCAAGAAGATGGTTCCCATCCAGGAAAAAGGGAAAGATAAAGCCCAAACCAATTCTGAAAACACTCTGATAAAGCCTAAGCCTTGCAAACTCTTTCTAGGGTTCACATTCAAAACTACAGCTGTGGATGCTTCTGAGACACAAGGCAGTACTTGTAGTGAGCTGCAACCCACACTGGTCCAACCAAACCAGGATATTTTATGGTGGGAAAGCCTATTCGCTGACCATACCATTGAAGATCAGGAGCTTATTGCCAGCCTCCTGGCTGACGAAACTGCATCAGCTGTAGATACCAATGGAGGTGGGAATTTTGATTTTCCTTTTGAAATGGGCCTCATTGGAGAAGCCATGATATAA 675 0.4267 MESLGVRKGKWTREEDFLLRKCVEKYGEEKWHLVPLRAGLSRCRKSCRLRWFNYLKPNIKRGKFASDEVDLMIRLHKLLGNRWSLIAGRLPGRTANDVKNYWHHHRFKKMVPIQEKGKDKAQTNSENTLIKPKPCKLFLGFTFKTTAVDASETQGSTCSELQPTLVQPNQDILWWESLFADHTIEDQELIASLLADETASAVDTNGGGNFDFPFEMGLIGEAMI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0986 224 FunFam Transcription factor MYB113 63 135 - -
Vvi2g0986 224 Gene3D - 62 133 - -
Vvi2g0986 224 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi2g0986 224 Gene3D - 8 60 - -
Vvi2g0986 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Vvi2g0986 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 59 IPR017930 -
Vvi2g0986 224 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vvi2g0986 224 CDD SANT 67 105 IPR001005 -
Vvi2g0986 224 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 127 - -
Vvi2g0986 224 SMART sant 7 57 IPR001005 -
Vvi2g0986 224 SMART sant 60 108 IPR001005 -
Vvi2g0986 224 FunFam Myb transcription factor 8 60 - -
Vvi2g0986 224 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Vvi2g0986 224 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vvi2g0986 224 CDD SANT 10 55 IPR001005 -
Vvi2g0986 224 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0986 Vvi-Chr2 14190188 14191283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0986 5 179 MYB Transcription Factor Family AT1G66370 50.971 1.21e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi2g0986 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0986 - K09422 vvi:100261946 468.388