Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0984 ATGAAGAGCTTAGGAGTTAGAAAGGGTGCATGGACCCAAGAAGAGGATGTTCTCCTGAGGAAATGCATTGAGAAATATGGAGAAGGAAAGTGGCATCTGGTTCCCCTCCGAGCAGGGTTGAATAGATGCCTAAAGAGCTGCAGATTGAGATGGCTCAATTATTTGAAGCCAGATATCAAGAGAGGAGAGTTTGCATTAGACGAGGTTGATCTCATGATTAGGCTTCACAATTTGTTGGGGAACAGATGGTCCTTGATTGCGGGTAGGCTTCCAGGGAGGACTGCTAATGATGTCAAGAACTATTGGCATGGTCACCACCTGAAAAAGAAGGTTCAGTTCCAGGAAGAAGGGAGAAAAAAACCCCAAACACATTCTAAAACCAAAGCTATAAAGCCTCACCCTCACAAGTTCTCCAAAGCCTTGCCAAGGTTTGAACTAAAAACTACAGCTGTGGATACTTTTGACACACAAGTAAGTACTTCCAGTAAGCCATCATCCACGTCACCACAACCGAATGATGACATCATATGGTGGGAAAGCCTGTTAGCTGAGCATGCTCAAATGGATCAAGAAACTGACTTTTCGGCTTCTGGAGAGATGCTTATCGCAAGCCTCTGGACAGAAGAAACTGCAACACAGAAAAAGGGAACACATTCTAAAACCAAAGCTATAAAACCTCACCCTCACAAGTTCTCCAAAGCCTTGCCAAGGTTTGAACTAAAAACTACAGCTGTGGATACTTTTGACACACAAGTAAGTACTTCCAGTAAGCTGATCCACGTCACCACAACCGAATGA 798 0.4398 MKSLGVRKGAWTQEEDVLLRKCIEKYGEGKWHLVPLRAGLNRCLKSCRLRWLNYLKPDIKRGEFALDEVDLMIRLHNLLGNRWSLIAGRLPGRTANDVKNYWHGHHLKKKVQFQEEGRKKPQTHSKTKAIKPHPHKFSKALPRFELKTTAVDTFDTQVSTSSKPSSTSPQPNDDIIWWESLLAEHAQMDQETDFSASGEMLIASLWTEETATQKKGTHSKTKAIKPHPHKFSKALPRFELKTTAVDTFDTQVSTSSKLIHVTTTE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0984 265 SMART sant 7 57 IPR001005 -
Vvi2g0984 265 SMART sant 60 108 IPR001005 -
Vvi2g0984 265 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vvi2g0984 265 FunFam Transcription factor MYB113 63 135 - -
Vvi2g0984 265 Pfam Myb-like DNA-binding domain 61 103 IPR001005 -
Vvi2g0984 265 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vvi2g0984 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Vvi2g0984 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 59 IPR017930 -
Vvi2g0984 265 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi2g0984 265 MobiDBLite consensus disorder prediction 112 134 - -
Vvi2g0984 265 CDD SANT 67 103 IPR001005 -
Vvi2g0984 265 CDD SANT 10 55 IPR001005 -
Vvi2g0984 265 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Vvi2g0984 265 Gene3D - 63 136 - -
Vvi2g0984 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 186 - -
Vvi2g0984 265 Gene3D - 8 60 - -
Vvi2g0984 265 FunFam Myb transcription factor 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0984 Vvi-Chr2 14179728 14180732 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0984 5 201 MYB Transcription Factor Family AT1G66370 50.000 7.72e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi2g0984 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0984 - K09422 vvi:100232838 524.242