Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0982 ATGGAGAGCTTAGGAGTTATAAAAGGTGCATGGAGCCAGAAAGAAGATGCTCCCCTGAGGAAATGCGTTGAGAAATATGGAGAAGGAAAGCGGCATCTGGTCCCCCCCATAGCAGGCTTGAATAGATGCCGAAAAAGCTGCAGATTGAGATGGGTCAACTATTTGAAGCCGAATATCAAGAGAGGAGAGTTTGCATTAGACGAGGTTGATCTCGTGATTAGGCTTCACAATTTGTTGGGGAACAGGCAAGTCATAACTAGCTTGATAACCATATTGGTGACATGA 285 0.4491 MESLGVIKGAWSQKEDAPLRKCVEKYGEGKRHLVPPIAGLNRCRKSCRLRWVNYLKPNIKRGEFALDEVDLVIRLHNLLGNRQVITSLITILVT* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0982 94 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 59 IPR017930 -
Vvi2g0982 94 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 83 - -
Vvi2g0982 94 CDD SANT 10 55 IPR001005 -
Vvi2g0982 94 SMART sant 7 57 IPR001005 -
Vvi2g0982 94 Gene3D - 7 60 - -
Vvi2g0982 94 SUPERFAMILY Homeodomain-like 9 84 IPR009057 -
Vvi2g0982 94 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Vvi2g0982 94 FunFam Myb transcription factor 8 60 - -
Vvi2g0982 94 ProSiteProfiles Myb-like domain profile. 8 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0982 Vvi-Chr2 14163373 14163753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0982 5 82 MYB Transcription Factor Family AT1G66370 69.231 1.55e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi2g0982 Myb_DNA-binding 7.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0982 - K09422 vvi:100233098 147.902