Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0972 ATGAATCTTTCAGAACTTGGTGAGGATGCAAGTCTACGAACAGCAGCAGAAGTGCAGAATAATCATAGGGAAGGTGGAGAGCTTTTTGATCTTAATTCTTTACCACCAGGATATAGATTTAATCCCACAGATGCAGAGATAATAGTTTTCTACTTGAGGAAGAAGCTTGACCATCAGTCATTGCCACCGAACAAGATAATAGAAGTCGATCTGTATGCTTATGGTCCTGACGAACTAGCAGCGAGATACGAGCCATCCGGGAGTGATGAATGGTTCTATTTCACTCCAAGGGATAGGAAATATCCGAATGGGCAACGTCCCAAGAGGTCAGTCGGAGGAGATGGATACTGGAAGGCTACCGGAGCTGATAAAGAGATCAAATTTGAGGATCGAACGGTAGGGTACCGGAAGGTTTTAGTCTTCTACCGAGGAAGCGTTCAAAACGGAGTCAAAACCAACTGGATCATGCATGAATTCAGAGTTGCTAAACATCCAGAGCCTCCAAGAATAAGTGGTGTCAATGATATGAGGTTGGATGACTGTGTTCTATGCAGAGTCTATAGGAAAGACGAAAGGATCTACAAAAGATCACGACATGAGTCTAGGCTTGATGAATCAGGCCCATCAAGCTCTAAGATTCCAAGACGTGACCTCCTCAACCATAATCCTAATGAGGCCAATAATCGATATGAGGAGCAGTACTCTTATAATAACATCCAAATGCCCCTCCAAACCCAACAGCCACAACCTAGAACTGAAATATTCCAAACCCCTCAAGAACATGATCATTTTGCTCTGCAAAGCAACACCCCTCAAGATCATATGAGGAGCAGTACTCTTAACCATAATCCTAATGAGGCCAATAATCGATATGAGGAGCAGTACTCTTATAATAACATCCAAATGCCCCTCCAAACCCAACAGCCACAACCTAGAACTGAAATATTCCAAACCCCTCAAGAACATGATCATTTTGCTCTGCAAAGCAACACCCAATTCCCTATCCTGGACCCTAATGTCTTGATGCCACGGCCCACTCCTCATCAGTCTATACACAGTATTGGGAATGAATTTGGAGGTCAGGGTCTAGATAACTTTGGTATAATGAATGGCACCTTTGGCAACAGCAGCTTTGATGCAGGGAATAATATTGATTCTGCCAACGTCCCTGGGTTCGATTCAACTAATTATGGAAACCCGGGTTTATATCCGATGATTTATTATGTCAACGATGCTACACCGATGTCATCAAACATGAATGGCAACTACGACCACGGTTTGCTGCATGGAAGAAACAATAATCGACAGTTATAG 1314 0.4315 MNLSELGEDASLRTAAEVQNNHREGGELFDLNSLPPGYRFNPTDAEIIVFYLRKKLDHQSLPPNKIIEVDLYAYGPDELAARYEPSGSDEWFYFTPRDRKYPNGQRPKRSVGGDGYWKATGADKEIKFEDRTVGYRKVLVFYRGSVQNGVKTNWIMHEFRVAKHPEPPRISGVNDMRLDDCVLCRVYRKDERIYKRSRHESRLDESGPSSSKIPRRDLLNHNPNEANNRYEEQYSYNNIQMPLQTQQPQPRTEIFQTPQEHDHFALQSNTPQDHMRSSTLNHNPNEANNRYEEQYSYNNIQMPLQTQQPQPRTEIFQTPQEHDHFALQSNTQFPILDPNVLMPRPTPHQSIHSIGNEFGGQGLDNFGIMNGTFGNSSFDAGNNIDSANVPGFDSTNYGNPGLYPMIYYVNDATPMSSNMNGNYDHGLLHGRNNNRQL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0972 437 MobiDBLite consensus disorder prediction 197 225 - -
Vvi2g0972 437 Gene3D NAC domain 43 195 IPR036093 GO:0003677|GO:0006355
Vvi2g0972 437 Pfam No apical meristem (NAM) protein 35 161 IPR003441 GO:0003677|GO:0006355
Vvi2g0972 437 PANTHER NAC TRANSCRIPTION FACTOR 56 34 251 - -
Vvi2g0972 437 MobiDBLite consensus disorder prediction 197 211 - -
Vvi2g0972 437 ProSiteProfiles NAC domain profile. 34 189 IPR003441 GO:0003677|GO:0006355
Vvi2g0972 437 SUPERFAMILY NAC domain 28 189 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0972 Vvi-Chr2 13978828 13980485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0972 32 189 NAC Transcription Factor Family AT3G04070 51.515 5.10e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi2g0972 NAM 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0972 - - vvi:104877457 922.539