Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0968 ATGGGAAGGTTGCTGAGAGGATGGTGGAGGGAAGCCAAGGAGAGCGCGTTAGGCTTTATGTCTGAGGCTGCAGTTGCCGTCGGTGCTGGAGGAACGTGGGTGCGAGGTGGTGGCCACGGAGATGTCCAGCCGCAAACCTCTCAAATTAGGAATCCCACACTGGAAGAGGTTATCCTGTGCCAAGGACCTATTCTTGGATACAAGAGGTCGAAGTCGAACCAGTATCCCAACACCTCTTTGATCCAGATCGAAGGCGTGGTAATGCGGCAAGAGAATGGCTTTTCGAAGGCCAAGGTGAAGAAGAACGAGATCACCGCACCACACACTGGCCGGAAAACGGGACTACGACGCCAATGGAACTGGTCGGAGGTCAAAAGAAGTTGCCACGCTCTTCCACGCGCCAGTGCGTGA 411 0.5499 MGRLLRGWWREAKESALGFMSEAAVAVGAGGTWVRGGGHGDVQPQTSQIRNPTLEEVILCQGPILGYKRSKSNQYPNTSLIQIEGVVMRQENGFSKAKVKKNEITAPHTGRKTGLRRQWNWSEVKRSCHALPRASA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0968 136 Pfam Ribosomal protein L35Ae 60 98 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vvi2g0968 136 Gene3D translation elongation factor selb, chain A, domain 4 47 127 IPR038661 -
Vvi2g0968 136 SUPERFAMILY Translation proteins 60 108 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0968 Vvi-Chr2 13836464 13836982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0968 58 108 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 47.826 1.95e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0968 K02917 - qsu:112018479 59.6918