Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0967 ATGGATATCCCTGATGAGGTCATTATGAAATTCAAGCAGTTCTGGTCAGACTTCAAAGATACCCCATTAAAAGGGAGAAATGCCATTCTTAGGGGTATTTGCCCACAAGTTTTTGGACTCTTCACTGTGAAACTTGCAGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGGACTAAGGTTCGAGGAGAGTCTCATTTGCTTCTAGTTGGTGATCCTGGTACTGGAAAATCTCAGTTCTTGAAGTTTGCTGCCAAGTTGAGCAACAGATCTGTTATTACTACTGGGTTTGGAAGCACTAGTGCTGGATTGACTGTTACTGCAGTCAGGGATGGAGGGGAATGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGTGGGCTTTGTTGTATAGACGAATTCAATAGTATGAGGGAACATGATAGGGCAACCATACATGAAGCAATGGAGCAACAGACTATAAGTATTGCCAAGGCTGGTCTTGTGACAACTCTTAATACCAGGACAATTGTCTTTGGTGCAACAAATCCTAAAGGACATTATGATCCTGGTCAATCTCTCTCTGTCAATACAACACTGTCTGGACCCTTATTGAGCAGATTTGATATAGTTCTTGTCCTCTTGGATACAAAGAACCCAGAATGGGATGCAGTTGTTTCTTCTCACATTCTTGCTGAGCCTGAAGAATCAGAGAATGGCAAGCGTGATGAAAATCTAGCCAATATCTGGCCGCTTCCCTTACTTAGGAGGTACATTCACTTTGTAAAAGGATACTTCAAACCGGTTCTGACAAAGGAAGCTGAGAAAGTAATTTCAAGTTATTATCAACTCCAAAGAAGATCAGCAACACATAATGCAGCAAGAACAACCGTGCGCATGCTAGAAAGCTTGATACGGTTAGCCCAAGCACATGCAAGACTGATGTTCAGAAATGAGGTCACCAGACTAGATGCCATCACAGCCATTCTCTGCATTGAATCATCCATGACCACCTCGGCCATTGTGGACAGTGTCGGGAATGCCCTGCACTCCAATTTCACTGAGAATCCTGATCAGGAATATGCCAAGCAAGAGAGGTTGATCCTGGAGAAGCTGAGTTCTATAGATGAATTTCCCGACATAATCAGCATACATGGATCAATAACCGGATGA 1167 0.4336 MDIPDEVIMKFKQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGFGSTSAGLTVTAVRDGGEWMLEAGALVLADGGLCCIDEFNSMREHDRATIHEAMEQQTISIAKAGLVTTLNTRTIVFGATNPKGHYDPGQSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEPEESENGKRDENLANIWPLPLLRRYIHFVKGYFKPVLTKEAEKVISSYYQLQRRSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFTENPDQEYAKQERLILEKLSSIDEFPDIISIHGSITG* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0967 388 PRINTS Mini-chromosome maintenance (MCM) protein family signature 152 165 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 PRINTS Mini-chromosome maintenance (MCM) protein family signature 175 187 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 PRINTS Mini-chromosome maintenance (MCM) protein family signature 66 81 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 PRINTS Mini-chromosome maintenance (MCM) protein family signature 202 210 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 PRINTS Mini-chromosome maintenance (MCM) protein family signature 124 138 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 Pfam MCM AAA-lid domain 252 333 IPR041562 -
Vvi2g0967 388 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 4 368 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 FunFam Probable DNA helicase MCM9 3 338 - -
Vvi2g0967 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 337 IPR027417 -
Vvi2g0967 388 SMART AAA_5 67 216 IPR003593 GO:0016887
Vvi2g0967 388 CDD MCM9 28 333 - -
Vvi2g0967 388 Pfam MCM P-loop domain 27 230 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 SMART mcm 1 335 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 ProSiteProfiles MCM family domain profile. 25 228 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g0967 388 Gene3D - 5 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0967 Vvi-Chr2 13772327 13803988 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0967 1 358 Core DNA Replication Machinery Family AT2G14050 86.592 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0967 K10738 - vvi:100243188 765.763