Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0959 ATGCATCAAATATATATATATATAGCCTCCCCTATTCTAGGAAAGGATAATTTTTTATACACACCTTGCCCAATCCAAAGCAAAAATTTCAACCACGATTATTTAATTCTGAGGGTGGGTTGCAGGTATTTTCACTTTGTCAAAGGATACCTAAAACCGGTTCTGACAAAGGTAGCTGAGAAAGTAATTTCAAGTTATTATCAACTCCAAAGAAGATCTGCAACACATAATGCAGCAAGAACAACCGTGCGCATGCTAGGAAGCTTGATACGATTAGCCCAAGCACATGCAAGACTGATGTTCAGAAATGAGGTCACCAGACTAGATGCCATCACAGCCATTCTCTGCATTGAATCATCCATGACCACCTCGGCCATTGTGGACAGTGTCGGGAATGCCCTGCACTCCAATTTAACAGAGAATCCTGATCAAGAATGTATCCCCAGTCTGTGTGTCCATAGTTAA 465 0.4108 MHQIYIYIASPILGKDNFLYTPCPIQSKNFNHDYLILRVGCRYFHFVKGYLKPVLTKVAEKVISSYYQLQRRSATHNAARTTVRMLGSLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNLTENPDQECIPSLCVHS* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0959 154 Gene3D - 26 126 IPR027417 -
Vvi2g0959 154 Pfam MCM AAA-lid domain 42 121 IPR041562 -
Vvi2g0959 154 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 140 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0959 Vvi-Chr2 13527224 13528253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0959 42 147 Core DNA Replication Machinery Family AT2G14050 83.019 1.12e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0959 K10738 - vvi:100243188 192.971