Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0954 ATGGATGAAAGATCTTCGTCTGTTACTTCTTCGCCTCTCCAATTGTTCTCCATGATGTCGCATTCACCTAGCTTGGGATCACCATATCCATGGCTTAGAGAGCTAAAATCCGAGGAGCGGGGCCTATATTTGATCCATTTGCTACTCACTTGTGCAAACCATGTAGCTTCTAGTAGCCTGGAAAATATGAATATTGCCATGGAGCAAATCTCCCAACTTGCCTCTGTTGATGGTGATACAATGCAGTGCATTGCTGCTTACTTCACGAAGGCACTTGCTGATTGA 285 0.4456 MDERSSSVTSSPLQLFSMMSHSPSLGSPYPWLRELKSEERGLYLIHLLLTCANHVASSSLENMNIAMEQISQLASVDGDTMQCIAAYFTKALAD* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0954 94 ProSiteProfiles GRAS family profile. 35 94 IPR005202 -
Vvi2g0954 94 Pfam GRAS domain family 44 93 IPR005202 -
Vvi2g0954 94 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 93 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0954 Vvi-Chr2 13406894 13407178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0954 2 94 GRAS Transcription Factor Family AT1G50420 68.041 2.63e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi2g0954 GRAS 4.9e-12 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0954 - - vvi:100253019 168.318