Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0942 ATGGCTAGGAAGAAGGTTAAGCTTCAGTGGATTGTGGATAATGCTGCTCGTAAGGCCACATATAAGAAGAGAGTGAAGGGTCTTATGAAAAAAGTAAGAGATCTCAGCATTTTGTGCGGCGTTGATGCGTGTGTAATCACGTACAGCCCATACCATCCAGAGCCCCAAGTTTGGCCTTCCCCGATTGAGGTCGAACAAGTCATTGCTGCGTTTAGGAGCCGGCCGGAGAATGACCAAACCAAGAAGGTCATGAACCAAGAAAATTTCACCTGGCAGAGGATATTCAAAGCGAGGGATGAAGTGGTGAAGCAGCAGATGAAGAACAGAAAAAAGGAGATCGAAAACCTAAGGATCCAGTGCTTGGGTGGTAGGCTGCTGGAGGGTTTAGAGAGTAAAGACCTCCCAGATTTAACGTGGGCCATTGACAATCAGTTGGAGGCAGTGAAGAACAGGACGGTTCTCGATCCCTGGCCCCAAGTAGCAGCTGACACGAGGGGCAGTGCTAATAATACTGGTACTGGTGGCGAGTCAAGCAGGCAGGCCTGGATCAGCCATGGAGTGCTTCTTCTCTTGTTTCAATTCATATTTGACCTATCTGTTTGA 603 0.4826 MARKKVKLQWIVDNAARKATYKKRVKGLMKKVRDLSILCGVDACVITYSPYHPEPQVWPSPIEVEQVIAAFRSRPENDQTKKVMNQENFTWQRIFKARDEVVKQQMKNRKKEIENLRIQCLGGRLLEGLESKDLPDLTWAIDNQLEAVKNRTVLDPWPQVAADTRGSANNTGTGGESSRQAWISHGVLLLLFQFIFDLSV* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0942 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Vvi2g0942 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Vvi2g0942 200 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vvi2g0942 200 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vvi2g0942 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi2g0942 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi2g0942 200 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi2g0942 200 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi2g0942 200 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Vvi2g0942 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0942 Vvi-Chr2 13151987 13152881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0942 1 151 Type I MADS-box Gene Family AT5G48670 48.026 2.34e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi2g0942 SRF-TF 6.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0942 - - vvi:100244339 356.681