Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi2g0940 | ATGGGGCGAAGATTGGAAGAGACTGTCCTGCATAGCGAACCAGTTGCCCTACAAATCCCAACCAACCGCGAAATCAAAGCTGAGAAGAAGAAGAAGAAGAAGCATAAACAGTCCAAAATCGCTTCTAATGAAGTGGTAGAAATTGGGAGGAAGAAGAAGAACGAAGACTACATAATCGAAGAAGAAACAGAGGCTAACCGAAAGAGAAAGCTCGAAGAAACGCCAACTGTAACAGAGGCGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAGGAGAAGAAGGAGAAAGAGGGAGAAGAAGAAGGCTTGAAGGATGAAGATGATAAGGAGAGCAGAGGGGCGTGCGTGGCGGTGACTGGAAAGGACGCGAAGGAATCGAAGTATGCGGCTTTCAAATCATTTGCCGAGTCGAAGCTGCCGGATGATGTGCTCGAGTGTTGCCGCAATTTCAGCCAGCCCTCACCGATTCAGTCCCATGCCTGGCCGTTCTTGTTGGACCACCGGGATTTTATCGGGATTGCTGCTACTGGGTCTGGTAAGACATTGGCATTTGGAGTTCCAGCAATGATGCATGTTTTGAGTAAGCGGAAGAGTAAAACATCCAAGGGAGTGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTTTGCTTGTATGGAGGAACTTCTAAAGGACCTCAAATAAGTTCCCTGAAGTCTGGTGTTGACATTGTCATAGGTACTCCTGGACGTTTGAAGGATCTAATTGAAATGGGTGTGTGTTGCCTTACAGAGGTATCTTTTGTGGTGTTAGATGAAGCAGATCGTATGCTGGACATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATTAGCTCAAGAATTTATGGATCCCAACCCAGTTAAGGTTGTAATAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAATACCACAAGTCCCAAAGAGTGTTAGTTTTTGTTTTGTACAAGAAAGAAGCTGCTCGTGTTGAAAATATGCTACAAAGAAGGGGTTGGAATGTTGTTTCTATACATGGTGATAAAGCGCAACAAGCACGTACAGCGGCATTATCATTATTCAAGAAGGGAAGCTGTCCTTTGATGATAGCTACAGATGTGGCTGCACGAGGATTGGATATTCCAGATGTGGAAGTAGTGATCAACTACAGTTTTCCTCTCACTACAGAGGATTATGTTCACAGAATTGGAAGAACTGGACGAGCTGGTAAGAAGGGTGTTGCACACACATTCTTCATGCAGGAAAACAAGGGACTTGCTGGGGAGTTGGTGAATGTTCTCAAAGAAGCAGGGCAGATTGTCCCTGCTGACCTTTTAAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTATATGGGGCTCACTTCAGAGAAATTGCTGCTGATGCTCCAAAGTCCAAAAAGATCACTTTTGACGACTCTGATGAAGATTGA | 1644 | 0.4489 | MGRRLEETVLHSEPVALQIPTNREIKAEKKKKKKHKQSKIASNEVVEIGRKKKNEDYIIEEETEANRKRKLEETPTVTEAKKKKKEKEKKEKKEKEGEEEGLKDEDDKESRGACVAVTGKDAKESKYAAFKSFAESKLPDDVLECCRNFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQENKGLAGELVNVLKEAGQIVPADLLKFGTHVKKKESKLYGAHFREIAADAPKSKKITFDDSDED* | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi2g0940 | 547 | Pfam | DEAD/DEAH box helicase | 154 | 323 | IPR011545 | GO:0003676|GO:0005524 | |
| Vvi2g0940 | 547 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 87 | 507 | - | - | |
| Vvi2g0940 | 547 | SMART | ultradead3 | 148 | 354 | IPR014001 | - | |
| Vvi2g0940 | 547 | MobiDBLite | consensus disorder prediction | 20 | 112 | - | - | |
| Vvi2g0940 | 547 | Gene3D | - | 341 | 514 | IPR027417 | - | |
| Vvi2g0940 | 547 | Pfam | Helicase conserved C-terminal domain | 364 | 472 | IPR001650 | - | |
| Vvi2g0940 | 547 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 160 | 337 | IPR014001 | - | |
| Vvi2g0940 | 547 | CDD | DEADc | 147 | 338 | - | - | |
| Vvi2g0940 | 547 | FunFam | ATP-dependent RNA helicase RhlB | 341 | 515 | - | - | |
| Vvi2g0940 | 547 | SMART | helicmild6 | 391 | 472 | IPR001650 | - | |
| Vvi2g0940 | 547 | Coils | Coil | 78 | 105 | - | - | |
| Vvi2g0940 | 547 | CDD | SF2_C_DEAD | 351 | 481 | - | - | |
| Vvi2g0940 | 547 | MobiDBLite | consensus disorder prediction | 39 | 112 | - | - | |
| Vvi2g0940 | 547 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 205 | 485 | IPR027417 | - | |
| Vvi2g0940 | 547 | Gene3D | - | 72 | 340 | IPR027417 | - | |
| Vvi2g0940 | 547 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 131 | 157 | IPR014014 | GO:0003724 | |
| Vvi2g0940 | 547 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 350 | 511 | IPR001650 | - | |
| Vvi2g0940 | 547 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 283 | 291 | IPR000629 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi2g0940 | Vvi-Chr2 | 13058517 | 13076756 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi2g0940 | 116 | 508 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 33.580 | 1.20e-55 | 191 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi2g0940 | K14811 | - | vvi:100247646 | 1020.76 |