Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0939 ATGTCTACAAAATCAGGTTGCGCAGTTTACATAGGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGAACGGCCAAAAGGTTATGCCTTCGCAGAATATGAGACAGAGGAAATTGCAGAATATGCTGTCAAGCTTTTCTCTGGCCTTGTGACATTGTACAACCGAACCCTGAAATTTGCGATTTCTGGGCAAGATAAGCCCTCACCAGCAGCAATCACCCCAAGACACCATGTACCATATAACAATATGGAAAGTTCTCAACACTCCATGGGGTTGAAAACGCCTTGCAGATTATCGGCTCACCCAGTAAATAATGCACAAGCATCCTCTGATGTGTTACACCAACCTAATAGGAATAGTTCACAACATGATGGCAACAATTATGACTACAGTCGAAGAGTTTTTGGTGCAACATTGGATAACATTAGCCGCTCTAGGTCAAGATACTATGATTCCAGTAGTCCAGTCACATATCCCTCTTACTAA 552 0.4293 MSTKSGCAVYIGNLDERVSERVLYDILIQVGRVVDLYIPRDKETERPKGYAFAEYETEEIAEYAVKLFSGLVTLYNRTLKFAISGQDKPSPAAITPRHHVPYNNMESSQHSMGLKTPCRLSAHPVNNAQASSDVLHQPNRNSSQHDGNNYDYSRRVFGATLDNISRSRSRYYDSSSPVTYPSY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0939 183 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 180 - -
Vvi2g0939 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Vvi2g0939 183 MobiDBLite consensus disorder prediction 127 150 - -
Vvi2g0939 183 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Vvi2g0939 183 MobiDBLite consensus disorder prediction 127 151 - -
Vvi2g0939 183 Gene3D - 1 90 IPR012677 -
Vvi2g0939 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Vvi2g0939 183 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0939 Vvi-Chr2 13051675 13055908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0939 7 66 Eukaryotic Initiation Factors Gene Family AT2G23350 35.000 8.91e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0939 K12831 - vvi:100252755 362.459