Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0930 ATGGCAACACCCTTGAATGCCTGTGCCTCCTCACAAAACCAAGCCACCAACACCCAAAGAGCCTCTGATAACACACACCCAAATGGCCACCCTCACTGGTTTTCACCAGAAACAGGCATCTACAGCAGCACATATCCTTCCCTACCCATTCCATCAGACCCACATCTTGATATAGTCTCCTTCATTTTCTCAAAAAACCATAATGGGGTCTCAGCTCTCACTGATTACTCGTCCGGGTTTTCCATATCTTACTCACAACTGCACCCACTGGTGAAATCCATGGCCTCTGGTCTGCACCAGATGGGCTTTTCACAAGGTGATGTAATTTTGCTTCTGTTGCCTAATTCTATCTACTTTCCTGTTATTTTCTTGGCTGTTCTGTCTCTTGGTGGAATTGCAACAACCATGAATCCTCTAAGCAGTCTCACTGAGATCAGGAAACAAACAGTTGGTTGTAGTTTGAGTCTGGCCTTTACTGTGCCTGAGACATCGGAGAAACTTGGAGCATTAGGTGTTCCTGTCATTGGAGTACCAGAAAATGGGAGTTTCAATTCCAAATCCAAGGAATTTTCTACTTTCCATTGGCTAATTTCTGGTGACCCGGATTGTTGTCCTAGGCCTGTGATTAATCAGCATGATGTGGCAGCAATAATGTACTCGTCTGGTACTACGGGTTCAACTAAAGCTGTTGTTCTAACGCATGGGAATTTCATAGCTATGGTTGAGACTTTTGTTCGATTTGAAGCTTCGCTGTATGAGAACTCGGGGTCGGAGAATGTTTACTTGGCTGTTTTACCAATGTTCCATATTTATGGGCTGTCACTTTTTGTGACGGGGTTGATATCATTGGGGTCTGCTATTGTTGTGATGAGGAAGTTCGATGCTAATGAGATGGTGAAAGCCATTGATCGATACAGAGTAACGCATTTTCCAGTCGTCCCACCAGTATTGATGGCATTGATAAAGAGTGCTAGGGCTGCTGGAGCTGGCTGTTTTGGGAGTTTGAAACAGGTTTGTTGTGGGGCTGCTCCTTTGACTCAGAAAAGCATACAGGAATTTGTGCAGACTCTGTCACATGTTGATTTGATTCAGGGTTATGGAATGACTGAGTCCACTGCAGTAGGAACTCGTGGGTTCAATACAAAGAAGCTTCGGAATTATTCTTCAATAGGCCTTTTGGCTCCAAACATGCGAGCCAAAGTGGTGGATTTGAGCAGTGGTTCTCTATTGCCTCCTGGAAACTGTGGGGAGCTATGGCTACAAGGACCTGGTATAATGAAAGGATATTTAAATGATGAGGAAGCAACGATTTCAACAATTGATAAAGAAGGTTGGCTACACACTGGAGACATTGTTTCTTTTGATCAAGATGGGTACTTGTATATGTTTTCTCGGATAAAAGAGATTATCAAATACAAGGGTTTTCAGATTGCTCCTGTTGATTTGGAGTCTATATTGATATCACATCCAGAAATAAGTGATGCTGCGGTGGCTGGGGTTGGGGATGAGGAGGCTGGGGAGGTACCAGTTGCATTTGTAGTCAAGAGACCTGGAAGTGCTCTTTCTCAGGCAGCTATTATTAACTATGTCGAGAAACAGGTTGCACCATACAAGAAGGTGAGAAAGGTTATATTCACACACCCCATACCCAAGTCTGCAGCTGGAAAGATCCTCAGAAGGGAACTAAAGCACTTATTTATGATTTCTAGAATTTAA 1716 0.4359 MATPLNACASSQNQATNTQRASDNTHPNGHPHWFSPETGIYSSTYPSLPIPSDPHLDIVSFIFSKNHNGVSALTDYSSGFSISYSQLHPLVKSMASGLHQMGFSQGDVILLLLPNSIYFPVIFLAVLSLGGIATTMNPLSSLTEIRKQTVGCSLSLAFTVPETSEKLGALGVPVIGVPENGSFNSKSKEFSTFHWLISGDPDCCPRPVINQHDVAAIMYSSGTTGSTKAVVLTHGNFIAMVETFVRFEASLYENSGSENVYLAVLPMFHIYGLSLFVTGLISLGSAIVVMRKFDANEMVKAIDRYRVTHFPVVPPVLMALIKSARAAGAGCFGSLKQVCCGAAPLTQKSIQEFVQTLSHVDLIQGYGMTESTAVGTRGFNTKKLRNYSSIGLLAPNMRAKVVDLSSGSLLPPGNCGELWLQGPGIMKGYLNDEEATISTIDKEGWLHTGDIVSFDQDGYLYMFSRIKEIIKYKGFQIAPVDLESILISHPEISDAAVAGVGDEEAGEVPVAFVVKRPGSALSQAAIINYVEKQVAPYKKVRKVIFTHPIPKSAAGKILRRELKHLFMISRI* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0930 571 CDD 4CL 50 562 - -
Vvi2g0930 571 FunFam 4-coumarate--CoA ligase 2 468 568 - -
Vvi2g0930 571 Pfam AMP-binding enzyme C-terminal domain 482 556 IPR025110 -
Vvi2g0930 571 Gene3D - 468 568 IPR045851 -
Vvi2g0930 571 MobiDBLite consensus disorder prediction 1 33 - -
Vvi2g0930 571 Gene3D - 39 467 IPR042099 -
Vvi2g0930 571 SUPERFAMILY Acetyl-CoA synthetase-like 68 566 - -
Vvi2g0930 571 Pfam AMP-binding enzyme 67 472 IPR000873 -
Vvi2g0930 571 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 563 - -
Vvi2g0930 571 FunFam Long-chain-fatty-acid--CoA ligase FadD 42 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0930 Vvi-Chr2 12710240 12715877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0930 22 566 Monolignol Biosynthesis Gene Families AT4G19010 61.355 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0930 K01904 - vvi:100261471 1125.92