Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0922 ATGGCAATCTGCACCGTGTACACAACCCAATCTCTCAACTCAACATGCTCAGTCTCTAAACCAGCGAAACCTCAATTGGGTTTCCACCAGAAGCAGGTGGTTTTCTTCACCAAAAGCAGGAGAAGATCGGGCATGAGCAGCTGCGGCAGCAGTGTGATAACGTGCTCAGCTGGAGAGCAACGGACAGTGGTCATAGGGTTGGCTGCAGACTCTGGGTGTGGGAAGAGCACCTTCATGAGGAGGCTGACCAGTGTGTTTGGAGGAGCTGCGGAGCCTCCAAGGGGTGGGAACCCAGACTCCAACACACTCATCAGTGACACCACCACTGTCATATGCTTGGATGACTATCACTCACTTGACAGAACTGGAAGGAAGGAGAAGGGTGTGACTGCGCTTGACCCTAGAGCCAACGATTTTGACCTCATGTATGAGCAGGTTAAAGCTATCAAGGATGGAATTGCTGTTGAGAAGCCCATCTACAACCATGTCACCGGCCTCTTGGATCCTCCCGAGACCATCAAGCCTCCCAAGATCCTCGTCATTGAAGGTTTGCACCCCATGTACGATGCTCGCGTAAGAGACCTCTTGGACTTCAGTATCTATTTGGACATTAGCAATGAGGTTAAATTTGCTTGGAAAATTCAGAGGGACATGGCTGAGCGAGGACATAGTCTTGAAAGCATCAAAGCCAGTATTGAAGCCCGAAAGCCTGATTTTGATGCTTATATTGATCCACAGAAGCAGTACGCGGATGCAGTGATAGAAGTGTTACCCACTCAGCTCATTCCCGATGACAACGAAGGCAAGGTTTTGAGAGTTCGATTGATCATGAAAGAAGGGGTGACGTATTTCAGCCCGGTTTACTTGTTCGATGAAGGCTCCACCATCTCATGGATCCCCTGTGGGAGGAAGCTTACATGCTCTTACCCTGGCATCAACTTCTCCTACGGCCCCGACACTTACTACGGCCATGAGGTTTCTGTTTTGGAGATGGATGGACAATTTGACAGATTAGATGAGCTCATTTATGTTGAAAGCCATCTGAGCAACATCTCGACCAAGTTCTACGGTGAAATCACCCAACAGTTGTTGAAGCACTCCGATTTCCCAGGAAGTAACAACGGAACTGGCCTCTTCCAAACCATAGTTGGGTTGAAGATAAGAGACCTCTTTGAGCAAATCGTCGCCAGCCGGGCTGCAACTCCCTTAGAAGCAACAAAAGCCTAA 1227 0.4906 MAICTVYTTQSLNSTCSVSKPAKPQLGFHQKQVVFFTKSRRRSGMSSCGSSVITCSAGEQRTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVEKPIYNHVTGLLDPPETIKPPKILVIEGLHPMYDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVTYFSPVYLFDEGSTISWIPCGRKLTCSYPGINFSYGPDTYYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEITQQLLKHSDFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAATPLEATKA* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0922 408 FunFam Phosphoribulokinase 59 289 - -
Vvi2g0922 408 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g0922 408 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Vvi2g0922 408 CDD PRK 64 353 - -
Vvi2g0922 408 Gene3D - 59 288 IPR027417 -
Vvi2g0922 408 PANTHER URIDINE KINASE 59 304 - -
Vvi2g0922 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 333 IPR027417 -
Vvi2g0922 408 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g0922 408 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g0922 408 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g0922 408 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0922 Vvi-Chr2 12236409 12239679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0922 116 254 PRT Gene Family AT3G27440 28.873 1.70e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0922 K00855 - vvi:100244092 812.757