Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0919 ATGGCAGATTCGAAGCCCAATTGTTTGGTGATTGATGAAATAGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTGGAGGTTATTCTAAAAATGGTTTCTATTGAAAGGAAAGGGCATAAAACTGCATCATTGTCAAGACCTGTGATTTGCATATGTAATGATCTATATGCACCTGCCCTGAGGCCTTTGCGTCAGGTAGCAAAGGTTCACATTTTTGTTCAACCGACAGTGAGTCGTGTGGTAAGCAGACTCAAATATATATGTAATATGGAAGGCCTAAAGACAAATTCCACGGCACTTGCTGCACTTACAGAGTATACTGGTGAAATGTGTGACATCCGTTCGTGCTTGAACACACTACAGTTTCTCAACAAGAAGAATCAAACCCTCAATGTGTTTGAGATCAGTTCCCAAGTGGTAGGTCAAAAGGACATGTCTAGAAGCATCTTTGATATCTAG 459 0.4161 MADSKPNCLVIDEIDGALGDGKGAVEVILKMVSIERKGHKTASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICNMEGLKTNSTALAALTEYTGEMCDIRSCLNTLQFLNKKNQTLNVFEISSQVVGQKDMSRSIFDI* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0919 152 Gene3D - 75 146 - -
Vvi2g0919 152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 130 IPR027417 -
Vvi2g0919 152 Gene3D - 1 74 IPR027417 -
Vvi2g0919 152 FunFam Chromosome transmission fidelity protein 18 75 144 - -
Vvi2g0919 152 CDD HLD_clamp_RFC 75 132 - -
Vvi2g0919 152 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0919 Vvi-Chr2 11836495 11847014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0919 9 124 Core DNA Replication Machinery Family AT5G22010 31.624 3.46e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0919 K11269 - vvi:100244400 271.166