Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0903 ATGAGGAGAAGACAAAATGGATGTAGAGTGAGGTGGTTAGAAAACACATGTGTGGACCTAGATAATCTAATCTCATGTCTACTGCAGATCCTCTTGCTTTGTGGTCCCCCAGGACTTGGGAAGACAACACTTGCACATGTCGTTGCTAAGCATTATGGATACCGTGTGGTGGAGATAAATGCTAGTGATGATCGGTCATCTTCAACAATTGAAGCTAAAATCCTTGATGTGGTCCAGATGAACTTTGTCATGGCAGATTCGAAGCCCAATTGTTTGGTGATTGATGAAATAGATGGAGCTCTTGGTGATGGTAGAGGTGCTGTGGAGGTTATTCTAAAAATGGTTTCCACTGAAAGGAAAGCTGATAATAGGAAGGGAAATGTTGCTAAAGTAGATGAGTCAGGACAGATATCCTCAAAAAAGGGGCATAAAACTGCATCATTGTCAAGACCTGTGATTTGCATATGTAATGGTCTATATGCACCTGCCCTGAGGCCTTTGCGTTAG 507 0.4241 MRRRQNGCRVRWLENTCVDLDNLISCLLQILLLCGPPGLGKTTLAHVVAKHYGYRVVEINASDDRSSSTIEAKILDVVQMNFVMADSKPNCLVIDEIDGALGDGRGAVEVILKMVSTERKADNRKGNVAKVDESGQISSKKGHKTASLSRPVICICNGLYAPALRPLR* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0903 168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 159 IPR027417 -
Vvi2g0903 168 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 29 168 - -
Vvi2g0903 168 Gene3D - 6 168 IPR027417 -
Vvi2g0903 168 SMART AAA_5 27 167 IPR003593 GO:0016887
Vvi2g0903 168 MobiDBLite consensus disorder prediction 123 143 - -
Vvi2g0903 168 Pfam ATPase family associated with various cellular activities (AAA) 31 121 IPR003959 GO:0005524|GO:0016887
Vvi2g0903 168 CDD AAA 31 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0903 Vvi-Chr2 11576142 11579157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0903 31 121 Core DNA Replication Machinery Family AT1G77470 38.776 3.81e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0903 K11269 - vvi:100244400 256.144