Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0867 ATGGGTTTCTTCTGTGGGAAATTTGATGGCACAACAATCATAGCAGAAATTTTCCAGCAGAACATTTTCTCAGTCAATATTATCAAGAATATGCTCGCTTTTATACTCTCTTATGTTCCCCTGTTAGGCAAATATGAACAAGATCCTGATGGTTTCTCAGAGGAATACCCTCGCCCTTCTTCTTTGCTAGTCCCAGTTCCCGTCCACTGCATAGTTGAATCCAGGAAGGAGAAACTTGTGTCAGCAGAATATAGTCGCCTTCTGGAGAGGTCAGGTGCAAATGCAGGTCTGCGTACATGTAAAGAAAGTGATTCCGAATGTGCGATATGCTTGAATTGCATAGAAGAAAGGCATGAAGTGAGAGAGCTTGGAAATTGCTGTCATGTGTTCCATAAAGGGTGCATAGATGTTTGGATGGATCAGGGCCAGGTAACTTGCCCTCTCTGTAGATCAAAGCTATTGCCAAATGATCAGGAAATGAAGCTCAAGTGTGGAGGAGATCCATGGAGGAAGGAGAGGATGATTTACCTGTTTGGTGAGGATCAATTTGATTGA 555 0.4288 MGFFCGKFDGTTIIAEIFQQNIFSVNIIKNMLAFILSYVPLLGKYEQDPDGFSEEYPRPSSLLVPVPVHCIVESRKEKLVSAEYSRLLERSGANAGLRTCKESDSECAICLNCIEERHEVRELGNCCHVFHKGCIDVWMDQGQVTCPLCRSKLLPNDQEMKLKCGGDPWRKERMIYLFGEDQFD* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0867 184 ProSiteProfiles Zinc finger RING-type profile. 107 150 IPR001841 -
Vvi2g0867 184 SMART ring_2 107 149 IPR001841 -
Vvi2g0867 184 PANTHER RING ZINC FINGER PROTEIN-RELATED 71 159 - -
Vvi2g0867 184 Pfam Ring finger domain 106 150 IPR001841 -
Vvi2g0867 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 160 IPR013083 -
Vvi2g0867 184 SUPERFAMILY RING/U-box 101 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0867 Vvi-Chr2 9955617 9956171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0867 1 181 C3H Transcription Factor Family AT3G43430 29.630 1.11e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0867 - K16281 vvi:104882492 381.333