LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0865	ATGAAGAAGTGTATAATAGTGCTTATTGTCTTGCTGGTCTTCAGTTATGGAGACTGGATACTGAGTACTGAAGCAGCTCCAGCTTCCATTGCTAAGCAAATCTCAGTCCCTGGAGATTACCAAAAAATTTCAGATGCGGTTCACGATGGTGTTCCCACAGGGAACAATGAATGGATTTTGATTAAAGTTGCCCCCGGAGTTTATACAGACACTGTCACTGTTCCTGCTAACAAACCCTACGTCATTATACAAGGTGGTGGCAAAGATAACACAATACTTGCTTGGAAGTCTGCTAATAAAGGCCTGGCAGATGCTCCTCTGATTGTAAGAGCAAGCAATTTCATTGCAAAAGATATTACTTTCAAGAACACATACAATCTTAATGAAGTAGCTCCAGCCGTTGCTGGCTTTGTACAAGGAGACAAGTGTTCTTTCTATCAATGTAATTTTCTTGGTGTACAAGATACCTTAGCGGATTACAATGGTCGCCATTTCTTCAGCTCTTGCTACATTGAAGGCACTACTGACTTCATTTTCGGTGATGGCACCTCCATTTACCAGGACTGCACAATAAACGCGACAGGAAGCGGTTATATAACAGCGCAAGGCAGAGAACAAGCCAACGAAGCTTCGGGTTTTGTCTTTAAATCTGCGAATGTGATTGGAAAAGGTCCAACATACCTGGGTAGAGCATGGAGGGCTTATTCCAGAGTACTGTTTTATCAATCCACATTTGCAGACATTATAGATCCAAAGGGGTGGGATGCTTGGGGAAATCCTGAGAACCAGCTAAGTTATTCAGAGGTGAATTGTACCGGCCCAGGAGCTACACAAGCAGGACGAGTTTCTTGGATGAAAAATCTAAGCCCCAATGAGCTTGGAGGGCTCGTCAACATGTCATTCATTGATCAGGAGGGATGGCTAGAAAATCAACCCAGCCTTTAG	945	0.4339	MKKCIIVLIVLLVFSYGDWILSTEAAPASIAKQISVPGDYQKISDAVHDGVPTGNNEWILIKVAPGVYTDTVTVPANKPYVIIQGGGKDNTILAWKSANKGLADAPLIVRASNFIAKDITFKNTYNLNEVAPAVAGFVQGDKCSFYQCNFLGVQDTLADYNGRHFFSSCYIEGTTDFIFGDGTSIYQDCTINATGSGYITAQGREQANEASGFVFKSANVIGKGPTYLGRAWRAYSRVLFYQSTFADIIDPKGWDAWGNPENQLSYSEVNCTGPGATQAGRVSWMKNLSPNELGGLVNMSFIDQEGWLENQPSL*	315

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0865	314	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	25	309	-	-
	Vvi2g0865	314	FunFam	Pectinesterase	25	312	-	-
	Vvi2g0865	314	SUPERFAMILY	Pectin lyase-like	37	309	IPR011050	-
	Vvi2g0865	314	ProSitePatterns	Pectinesterase signature 2.	171	180	IPR033131	-
	Vvi2g0865	314	Gene3D	-	28	313	IPR012334	-
	Vvi2g0865	314	Pfam	Pectinesterase	38	286	IPR000070	GO:0030599\|GO:0042545

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0865	Vvi-Chr2	9543466	9546309	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0865	41	309	Carbohydrate Esterase	AT1G05310	39.446	9.70e-63	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0865	-		-	vri:117930183	394.045