Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0850 ATGGAGCGAGAAAAAGCCCTAACGCTTAAAGCTGTGGCAGAGGAAAAGTACAAGCAATCGAAACTCAAGTCCGCGCTAAAATACGCTAGGAAGGCGCTGCGCCTCTCTCCTGACCTCGACGGTGTCTCCGAGATGATCACCGCCTTCAAGATCCTCAGAGTGGGCGGGAAGCGCTCCGGCGCCGGCGACTCTCCGGACTGGTACAAGATCCTCCAGGTCGAGCCCTTCTCTCATATCAACTCTATCAAGAAGCAGTACAAGAAGCTTGCCCTTGTTTTGCACCCCGACAAGAACCCCTTTGTTGCCTCCGAGGAGGCCTTCAAACTCATTGGCGAAGCCTTTCGATGCCTCTCTGATAAGATTCGCCGGAAGGAGTATGACCTTAAGCTTCGCATCGCGATGCAGTCCGCTGCCGCCGGAGATGGCGGTGGTGGTGCGACGGAGACGTTTTGGACGGCGTGTTCGACGTGCAGGTTGTTGCATCAGTTCGAGAGGAAGTACATTGGGCAGAATTTAATGTGCCCTAGCTGTAAGAAGAGCTTCTTGGCTTTGGAGGTGGAGAACCAAAACAACGAGGTTTTGGCGAGTAAGGAGAGCGGGAGCAGGGTTGGGAGGTTGAGAAATGTGCGTTCTGTTCGGAAAATGATGAGCAGTGATGTTGAAACGACCGCTGGTAAATCTAAAAACGCGGATTTGAATACAGAAAATGTTCGGAAGCCAAGAACTGTGGGTTCAAAGAGGAAAATGAGCAGTGTTAATGAGGTTTTGGAGAGGTCGAAGGTAAGGAGAGAAATGACTTTGGCGGAAATGCAAATGGAAGCCAAACGAAAGGCGCAGGAGGAGAAGAAGAAGGAGAAGTTAAAGGAGGAACAAGAGAAAGAGAAGAAAAAGAGGAATGAGGTGAAAGAGAAAGAGAAAGAGAAAGAGAAGGAGGTGCAGGACAAAGTGAAAGAGAGCCGCAGCAGGACCAAAAGTGGTGGGGGTTTAGAAATTCAGAAACGCAGGGCTTCAAAGGGTGACGGTTTAGAACTTGAGAGGCGAGGGGCGTGGAAGAGTGGGGATTTTGAAATAATGACAGTAGAAGATTCGGATTTTTATGATTTTGATAAAGATAGAGTGGAGAGGAGTTTCAAGAAAGGGCAAGTCTGGGCAATTTATGATGATGATGATGGAATGCCAAGGCATTATGGTTTAATTGATGAAGTTGTGTCAGTAAATCCTTTTCAGATGAAGATGAGTTGGTTGGATCTTCAGGACAATGGAGATGAGGGGTTGATTTTTTGGGAGAAATTGGGGTTTCATGTATCTTGTGGGAGGTTTAAGGTTGCTAAGAAGACTCTTATAAATTCTGTGAATTTCTTTTCTCATGTTGTGGATTGTGAAAGGGCAGCCCGGGAAGTTTATAGAATTTATCCGAAAAAGGGGTCTGTGTGGGCACTTTATAATCAAGAGGCTTTGGGTACAGAAGAAAGAAACTCGGGTAGCAACAAACGATGCTATGACATAGTTGTGTTTTTAACGAGTTACAGTGAGATGTATGGCTTAAGCATGGCATATCTTGAGAAGGTTGAGGGGTTTAAGACGGTATTTAAGAGACAGGAGATTGGGTGTCGTGCTATTAGATGGCTTGAGAAGGATGATATTCGGATGTTTTCGCATCAGATTCCTGCGAGGAAGCTTTGTGAGGAGGAATCCTTAGATCCTTCAAAAGACTATTGGGAACTTGATCCTGCTTCGCTACCTTCGGATTTGCTTACTATTGGATGGCAGAGGTAA 1776 0.4645 MEREKALTLKAVAEEKYKQSKLKSALKYARKALRLSPDLDGVSEMITAFKILRVGGKRSGAGDSPDWYKILQVEPFSHINSIKKQYKKLALVLHPDKNPFVASEEAFKLIGEAFRCLSDKIRRKEYDLKLRIAMQSAAAGDGGGGATETFWTACSTCRLLHQFERKYIGQNLMCPSCKKSFLALEVENQNNEVLASKESGSRVGRLRNVRSVRKMMSSDVETTAGKSKNADLNTENVRKPRTVGSKRKMSSVNEVLERSKVRREMTLAEMQMEAKRKAQEEKKKEKLKEEQEKEKKKRNEVKEKEKEKEKEVQDKVKESRSRTKSGGGLEIQKRRASKGDGLELERRGAWKSGDFEIMTVEDSDFYDFDKDRVERSFKKGQVWAIYDDDDGMPRHYGLIDEVVSVNPFQMKMSWLDLQDNGDEGLIFWEKLGFHVSCGRFKVAKKTLINSVNFFSHVVDCERAAREVYRIYPKKGSVWALYNQEALGTEERNSGSNKRCYDIVVFLTSYSEMYGLSMAYLEKVEGFKTVFKRQEIGCRAIRWLEKDDIRMFSHQIPARKLCEEESLDPSKDYWELDPASLPSDLLTIGWQR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0850 591 Coils Coil 267 322 - -
Vvi2g0850 591 ProSiteProfiles TPR repeat profile. 6 39 IPR019734 GO:0005515
Vvi2g0850 591 MobiDBLite consensus disorder prediction 215 239 - -
Vvi2g0850 591 MobiDBLite consensus disorder prediction 215 338 - -
Vvi2g0850 591 PANTHER BNAC03G44070D PROTEIN 3 581 - -
Vvi2g0850 591 SMART dnaj_3 65 122 IPR001623 -
Vvi2g0850 591 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vvi2g0850 591 MobiDBLite consensus disorder prediction 251 338 - -
Vvi2g0850 591 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vvi2g0850 591 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vvi2g0850 591 PRINTS DnaJ domain signature 122 141 IPR001623 -
Vvi2g0850 591 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vvi2g0850 591 Pfam DnaJ domain 66 127 IPR001623 -
Vvi2g0850 591 SUPERFAMILY Chaperone J-domain 64 153 IPR036869 -
Vvi2g0850 591 Pfam Domain of unknown function (DUF3444) 357 564 IPR024593 -
Vvi2g0850 591 CDD DnaJ 66 119 IPR001623 -
Vvi2g0850 591 Gene3D DnaJ domain 54 141 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0850 Vvi-Chr2 9220341 9222116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0850 2 186 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.592 1.37e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0850 - - vvi:109121415 1094.72