Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0847 ATGGGCAGTAGTGAGATGGATAAGGCAGGGAAGGAGAAGGAGTCAAAGACACCGCCTACTACTACACAGGAGCAGTCTTCAACCACGAGCGCTGGAACAGTTAATCCTGATTGGTCTGGATTTCAGGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGCATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGGGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCTGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATATGCTTACAGGCAAGAATAATGAACTTGGTAAAACATCAGGAGCATCTGCTAATGGAGTGTATTCTAAAAGTGCTGAGAGTGCTAGTGAAGGTTCAAGCGAAGGGAGTGATGCAAATTCTCAGAGTGACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAGCTGAAACATCTCAGAATGGCAGCACTTGCCATGCTCCTCAAAATGGAGGACCAAATACACCTCATGCAATGGTGAACCAAACAATGGCCATCATGCCAATATCAGCACCTGGTGCTCCAGGAGGTGTTCCTGGTCCTACTACAAACTTAAACATTGGAATGGATTACTGGGGTGCTCCAACTTCATCTACTATTCCTGCAATGCGTGGGAAGGTTCCTTCTGCTCCAGTCACAGGAGGAATTGTTACTGCTGGGTCACGAGACAGTGTTCAATCACAGCTTTGGTTACAGGATGAAAGAGAGCTTAAAAGACAGAGAAGAAAGCAGTCGAACCGGGAGTCTGCTCGCCGATCCAGGTTGCGTAAGCAGGCGGAATGTGATGAGCTGGCCCAGCGTGCTGACGCTTTAAAAGAAGAGAATGCCTCTCTTAGAGCAGAAGTCAGTCGCATCAAGAGCGAGTATGAGCAGCTTCTGTCTGAGAATGCCTCTCTTAAGGAGAGACTTGGAGAAATTCCGGGGCAGGATGATCATAGAACTGGTGGGAGGAACGAGCAACACTTGGGTAATGACACTAAACAAACTGGACAAACTGGGCAAGCAGAGCATGGGCAGGGTGGTCACTAA 1242 0.4775 MGSSEMDKAGKEKESKTPPTTTQEQSSTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHLMPPYGTPPHPYVAMYPPGGLYAHPSIPPGSYPFSPFAMPSPNGIAETSGTTPGSMEADGKSSEGKEKLPIKRSKGSLGSLNMLTGKNNELGKTSGASANGVYSKSAESASEGSSEGSDANSQSDSQLKSGCRQDSLEAETSQNGSTCHAPQNGGPNTPHAMVNQTMAIMPISAPGAPGGVPGPTTNLNIGMDYWGAPTSSTIPAMRGKVPSAPVTGGIVTAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADALKEENASLRAEVSRIKSEYEQLLSENASLKERLGEIPGQDDHRTGGRNEQHLGNDTKQTGQTGQAEHGQGGH* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0847 413 Pfam Disordered region downstream of MFMR 135 272 - -
Vvi2g0847 413 MobiDBLite consensus disorder prediction 146 229 - -
Vvi2g0847 413 MobiDBLite consensus disorder prediction 1 42 - -
Vvi2g0847 413 MobiDBLite consensus disorder prediction 111 229 - -
Vvi2g0847 413 MobiDBLite consensus disorder prediction 367 413 - -
Vvi2g0847 413 MobiDBLite consensus disorder prediction 111 126 - -
Vvi2g0847 413 CDD bZIP_plant_GBF1 310 360 IPR045314 GO:0003700|GO:0006355
Vvi2g0847 413 MobiDBLite consensus disorder prediction 375 391 - -
Vvi2g0847 413 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 307 370 IPR004827 GO:0003700|GO:0006355
Vvi2g0847 413 MobiDBLite consensus disorder prediction 392 413 - -
Vvi2g0847 413 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 312 327 IPR004827 GO:0003700|GO:0006355
Vvi2g0847 413 SMART brlzneu 305 369 IPR004827 GO:0003700|GO:0006355
Vvi2g0847 413 Gene3D - 308 363 - -
Vvi2g0847 413 Pfam bZIP transcription factor 305 367 IPR004827 GO:0003700|GO:0006355
Vvi2g0847 413 MobiDBLite consensus disorder prediction 19 40 - -
Vvi2g0847 413 SUPERFAMILY Leucine zipper domain 308 364 IPR046347 GO:0003700|GO:0006355
Vvi2g0847 413 Coils Coil 325 373 - -
Vvi2g0847 413 MobiDBLite consensus disorder prediction 1 18 - -
Vvi2g0847 413 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 395 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi2g0847 413 MobiDBLite consensus disorder prediction 307 331 - -
Vvi2g0847 413 Pfam G-box binding protein MFMR 1 96 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0847 Vvi-Chr2 9138182 9152411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0847 1 401 bZIP Transcription Factor Family AT2G35530 65.770 1.47e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi2g0847 MFMR_assoc 5.3e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0847 K09060 - vvi:100243644 803.897