Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0826 ATGTACGGAGACTGCCAAGTTCTGACATCAATGGGAGGCAACGTAGTCTCTTCAGATTCCCTCTTTTCTTCGCCGATCCGAAACCCTAACTTCAACTTCATGTCATCCATGGGTGGCCCTTTCCATGCCTTCTCATCCATCATTCCCAAGGAAGAGAGTGGGCTTTTGAGAGGGAAAGATGAGATGGAGAGTGGGTCTGGAAGTGAGCATATCGAAGGAGTGTCAGGCAACGAGCAAGAGAACGAACAACAACCCAAGAAAAAACGCTACCACAGACACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTATTCAAGGAATGCCCACACCCAGATGACAAGCAGAGGATGAAACTCAGCCAAGAACTTGGCCTCAAACCACGCCAAGTCAAGTTTTGGTTCCAAAACCGGCGAACCCAGATGAAGGCCCAACAAGACCGTTCTGATAATGTGATACTAAGAGCCGAGAATGAGAACTTGAAGAATGAGAATTACCGGCTGCAAGCGGCCCTCCGAAGTGTTATCTGTCCTAACTGTGGTGGTCCAGCAATGCTGGGGGAGATCGCCTTTGATGAACAACAACTTCGCATCGAAAATGCTCGGCTTAAAGAAGAGTTGGATCGTGTTTGTTGCCTTGCTTCACGCTATGGTGGCCGGGCGATCCAAGCAATAGGACCGCCCCCTCCACTGCTTGCGCCTTCCTTGGATCTGGATATGAGTATCTATGCCAGGAATTTCCCAGAGCCTATGGCTAATTGCACCGACATGATTCCAGTGCCTTTAATGCCAGAAAGCTCTCACTTTCCAGAAGGCGGTCTCGTATTAGAGGAGGAAAAGTCTCTTGCGCTTGAACTTGCCATATCATCTGTTGATGAGCTTGTGAAGATGTGCCAGCTTGGGGAGCCTCTTTGGATCCGAAGCAATGAAAATGGGAAGGAAGTAATTAATGTTGAAGAGTATGGAAGAATGTTCCCATGGCCGATGAACCTCAAGCAGCACCCAGGTGAATTCAGGACAGAAGCTACCCGTGACAGCGCCGTAGTTATAATGAATAGCATCAATTTGGTAGATGCCTTCTTAGATGCTATGAAATGGATGGAGCTGTTTCCTTCCATTATTTCTAGAGCAAAAACTGTTCAAGTTCTTTCAGGCGTTTCTGGTCATGCAAATGGTTCCCTTCATCTGATGTATGCAGAATTGCAAGTTCTCTCACCTTTGGTTCCAACGCGTGAGACACATTTCCTTCGTTACTGCCAACAAAATGTCGATGAGGGAACTTGGGCAATTGTTGATTTTCCCATTGATAGCTTCAATGACAATCTCCAACCTTCCGTGCCTAGATACAGGAGACGACCCTCTGGCTGCATTATTCAAGATATGCCAAATGGATACTCGAGGGTAACATGGGTAGAACATGCTGACGTAGAGGAAAAACCTGTCCATCATATATTTCATCACTTTGTCAACAGCGGGATGGCATTTGGAGCTACACGCTGGCTTGCAGTCTTACAGCGACAATGCGAGAGGGTTGCAAGCCTCATGGCCAGAAATATATCAGACCTAGGAGTGATACCTTCTCCTGAGGCTCGGAAGAACCTGATGAATTTAGCACAAAGAATGATAAGAACATTCTCGGTTAACATCAGCACTTCCAGTGGTCAGTCTTGGACGGCTCTTTCTGATTCCTCTGATGACACTGTTAGGATAACCACAAGGAAAATCACTGAGCCTGGGCAACCCAATGGGGTTATCCTAAGTGCTGTATCCACTACTTGGCTGCCACATCCTCACTACCATGTTTTTGATCTCTTGAGAGATGAACGTAGGAGAGCTCAGCTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATGTGGCCAGCAATTCATCACAGAACGTAGAGCTCATGCTGCAAGAGAGCTGCACCGACCAGTCCGGCAGCCACGTGGTTTACACCACCATTGACGTGGATGCTATTCAGCTAGCCATGAGCGGTGAGGACCCCTCCTGCATTCCCCTGCTCCCAATGGGGTTTGCCATAGTCCCAGTGGTACCTAACAATGACTGCAACATCATGACCACCACCGACGACAACCCGATGCCGCCTTCAGGAGACGGAAATGGACACAACTCAGGCTGTCTGCTCACTGTAGGTCTACAAGTTCTGGCCAGCACAATCCCAACTGCAAAGCTCAACCTGTCGAGCGTCACGGCCATCAACAACCATTTATGCAACACAGTACATCAAATCAATGCTGCACTTAGCAGCATCTGCCCTGATAATAGCAGTAGCATGGTCGGCTCTTCCACAGAGCCAGCTGCTCCACCAAAGCAGTAG 2397 0.4814 MYGDCQVLTSMGGNVVSSDSLFSSPIRNPNFNFMSSMGGPFHAFSSIIPKEESGLLRGKDEMESGSGSEHIEGVSGNEQENEQQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRSVICPNCGGPAMLGEIAFDEQQLRIENARLKEELDRVCCLASRYGGRAIQAIGPPPPLLAPSLDLDMSIYARNFPEPMANCTDMIPVPLMPESSHFPEGGLVLEEEKSLALELAISSVDELVKMCQLGEPLWIRSNENGKEVINVEEYGRMFPWPMNLKQHPGEFRTEATRDSAVVIMNSINLVDAFLDAMKWMELFPSIISRAKTVQVLSGVSGHANGSLHLMYAELQVLSPLVPTRETHFLRYCQQNVDEGTWAIVDFPIDSFNDNLQPSVPRYRRRPSGCIIQDMPNGYSRVTWVEHADVEEKPVHHIFHHFVNSGMAFGATRWLAVLQRQCERVASLMARNISDLGVIPSPEARKNLMNLAQRMIRTFSVNISTSSGQSWTALSDSSDDTVRITTRKITEPGQPNGVILSAVSTTWLPHPHYHVFDLLRDERRRAQLDVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSHVVYTTIDVDAIQLAMSGEDPSCIPLLPMGFAIVPVVPNNDCNIMTTTDDNPMPPSGDGNGHNSGCLLTVGLQVLASTIPTAKLNLSSVTAINNHLCNTVHQINAALSSICPDNSSSMVGSSTEPAAPPKQ* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0826 798 Gene3D - 73 155 - -
Vvi2g0826 798 SUPERFAMILY Bet v1-like 548 771 - -
Vvi2g0826 798 FunFam Homeobox-leucine zipper protein GLABRA 2 284 508 - -
Vvi2g0826 798 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 774 IPR042160 -
Vvi2g0826 798 FunFam Homeobox-leucine zipper protein HDG1 75 160 - -
Vvi2g0826 798 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Vvi2g0826 798 CDD START_ArGLABRA2_like 279 508 - -
Vvi2g0826 798 MobiDBLite consensus disorder prediction 57 95 - -
Vvi2g0826 798 CDD homeodomain 87 145 IPR001356 GO:0003677
Vvi2g0826 798 Coils Coil 143 170 - -
Vvi2g0826 798 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Vvi2g0826 798 SUPERFAMILY Homeodomain-like 75 145 IPR009057 -
Vvi2g0826 798 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Vvi2g0826 798 SUPERFAMILY Bet v1-like 276 511 - -
Vvi2g0826 798 SMART START_1 284 509 IPR002913 GO:0008289
Vvi2g0826 798 Pfam START domain 285 509 IPR002913 GO:0008289
Vvi2g0826 798 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Vvi2g0826 798 SMART HOX_1 85 148 IPR001356 GO:0003677
Vvi2g0826 798 Gene3D - 334 512 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0826 Vvi-Chr2 8739817 8745455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0826 7 791 Homeobox Transcription Factor Family AT5G46880 58.796 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi2g0826 START 3.9e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0826 - - vvi:100253940 1597.79