Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0820 ATGGTGGAAGGAAGGGTTTGTTTGTCTAGAGAGGCTAAAAATGGGTTAGAATTTCTGAGGCACAAACGGCTTCAGCGAATGAAATCAAGAACTGCCGATCAGACTGTAAGTGTCAGTAACATGATGACTAGAAGTGGAGGAGATGCTTTAAGACCTTCATCATCATGTGGTGTGAGATTACATGGTAATACAGATTCATTTTATAGATCCAGTGGAGCTCTAAATGAGAAGGATGCCTTTTCAAAGCGTAAGGTGGATAAGTTTGATACAACTGATCTAGAATGGATTGATAAAATTCCAGAATGCCCTGTTTACCGTCCAACAAAGGAGGATTTTGAGGACCCACTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAAATTATTTCCCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTATTGATGAAGGAGAAAATGGGTTTCAAGTTTACAACTAGAGTACAACCTCTTCGTCTTGCTGAGTGGGATAGTGATGACAAAGTCACCTTTTTCATGAGTGGAAGAAATTATACATTTCGTGATTTCGAGAAAATGGCGAACAAGGTTTTTGCTCGTAGATATTGTAGTGCTGGATGTCTTCCTTCCTCGTACTTGGAAAAAGAATTTTGGCATGAAATAGCTTGTGGAAAGACAGAAACAGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCATCTTCCCCCAATGATCAGCTCGGAAAAAGCAAATGGAATTTAAAGAAACTTTCCCGGCTGCCCAAGTCTATTTTACGTCTTCTAGAATCTGAAATTCCGGGAGTAACTGATCCCATGCTTTACATTGGAATGCTATTTAGTATGTTTGCTTGGCATGTGGAGGATCATTACTTGTATAGTATCAATTATCATCACTGTGGGGCATCGAAGACTTGGTATGGCATTCCAGGTCATGCGGCTTTGGAATTTGAAAAGGTGGTTAGGGAACATGTGTATACACGTGATATTCTATCAGCTGATGGAGAGGATGGAGCTTTTGATGTACTTTTGGGCAAAACTACTTTGTTTCCTCCAAATATTTTGTTAGAACATGATGTTCCTGTCTACAAGGCTGTGCAAAAGCCAGGGGAATTTGTAATCACCTTTCCTAGAGCATATCATGCTGGATTCAGTCATGGTTTCAATTGTGGTGAGGCAGTAAACTTTGCGATTGGTGATTGGTTCCCGCTAGGGGCAGTTGCTAGCCGACGATATGCACTTCTTAACAGGATGCCTCTCCTTCCTCATGAAGAACTCCTGTGCAAAGAAGCAATGCTTCTCTATACGAGTTTAGAACTTGAAGACCCAGATTATTCATCTACTGACTTGGCATCTCAACATTCCATGAAGCTTTCTTTTGTGAATCTGATGCGGTTCCAGCACAATGCTCGCTGGGCTTTAATGAAATCAAGGGCATGTACAGCAATATTTCCAAATTCTGGTGGAACTGTTCTCTGCAGCCTATGCAAACGTGACTGCTATGTTGCATATCTTAACTGCAACTGTTACTTGCATCCTGTGTGCCTTCGGCATGATGTTAACTCGCTTAAGTTACCATGTGGGAGCAATCATAATCATACCCTCTCTTTGAGGGAAGACATTTCAGAAATGGAAGCTGCAGCTAAGAGGTTTGAGCAGGAGGAAGAAATATTTCAGGAGATTCAACATGCTAAAAGTGATGATGACTTATCTCCTCTGTCAGATATGTTCTTAATTTCTGAAGAGGATGGATACTATCCTTATTGTGAGATAGACTTTGGACTGGTCCCTGGGATTCCAGTAGCTACCCAGGATGAGTCACCAGAGCTAGAGCAGAGTGCTCCTAGCCAGCCTCCTTTCAACAGTGGGAGAGAATATTTTAGAACTGAAATGTCAGATGCTTCCCTTTCTTGTGCTGCATCAACTCTTTGCTCTTTTCTAAAACCAGTTGAGAGCTCTTCCATACCCAGGAATGTACAGGGGGATGCTAAGTTTAACTTAGGAGATCATGTTTCTAGAAAGTTTTCTGAAGATATATCCCAAAATATACATGAATCTTGTCTATCCTCTCTATCATGTGATGAATGCTTGAGTACCCATCAAAATTTTCATGGATCAGAGGTTAAGCCTATCATAGATCAAGACAGTGATGATTCTGATTCAGAAATATTCAGGGTTAAACGCCGTTCTTCTGTTAAGGTGGAGAAAAGAAATGCAAATGATGCCTCATCTGTTAAGCATTTTGATCATCAGGGGCTTAAACGACTGAAGAAACTCCAGCCTCAAGGAAGATGTGGGCAATTGACTTTATCAGAGTGCTCAATGACTAATGAACAGAACCGAAGTTTTAGCTCCAGCTCTCATCATTCCAAGCGAAGCACTGATAATGTTCCAAGAGACAGGTTCTCTGCAGGAACCACCATGCCAATCTCCATTAAGTTTAAGAAGATGGCAAATGAGGAAGCAATGAGTAGACAGAGAGAACACCACAGGAAGGATAGGTTTCATGATTTGGGAAAGACAATGAGAGAACCACCGTCTATAGAGATTGGGCCGAAGCGTCTAAAAGTCAGAGGTCCATCATTTCTAGGATGGGAGAGCAGGTTGGATTGA 2631 0.4135 MVEGRVCLSREAKNGLEFLRHKRLQRMKSRTADQTVSVSNMMTRSGGDALRPSSSCGVRLHGNTDSFYRSSGALNEKDAFSKRKVDKFDTTDLEWIDKIPECPVYRPTKEDFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKMGFKFTTRVQPLRLAEWDSDDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPSSYLEKEFWHEIACGKTETVEYACDVDGSAFSSSPNDQLGKSKWNLKKLSRLPKSILRLLESEIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFEKVVREHVYTRDILSADGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRMPLLPHEELLCKEAMLLYTSLELEDPDYSSTDLASQHSMKLSFVNLMRFQHNARWALMKSRACTAIFPNSGGTVLCSLCKRDCYVAYLNCNCYLHPVCLRHDVNSLKLPCGSNHNHTLSLREDISEMEAAAKRFEQEEEIFQEIQHAKSDDDLSPLSDMFLISEEDGYYPYCEIDFGLVPGIPVATQDESPELEQSAPSQPPFNSGREYFRTEMSDASLSCAASTLCSFLKPVESSSIPRNVQGDAKFNLGDHVSRKFSEDISQNIHESCLSSLSCDECLSTHQNFHGSEVKPIIDQDSDDSDSEIFRVKRRSSVKVEKRNANDASSVKHFDHQGLKRLKKLQPQGRCGQLTLSECSMTNEQNRSFSSSSHHSKRSTDNVPRDRFSAGTTMPISIKFKKMANEEAMSRQREHHRKDRFHDLGKTMREPPSIEIGPKRLKVRGPSFLGWESRLD* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0820 876 SMART cupin_9 246 419 IPR003347 -
Vvi2g0820 876 MobiDBLite consensus disorder prediction 783 815 - -
Vvi2g0820 876 Coils Coil 540 560 - -
Vvi2g0820 876 PANTHER LYSINE-SPECIFIC DEMETHYLASE 94 824 - -
Vvi2g0820 876 Pfam C5HC2 zinc finger 499 552 IPR004198 -
Vvi2g0820 876 ProSiteProfiles JmjN domain profile. 102 143 IPR003349 -
Vvi2g0820 876 Gene3D Cupin 102 465 - -
Vvi2g0820 876 Pfam JmjC domain, hydroxylase 279 402 IPR003347 -
Vvi2g0820 876 Pfam jmjN domain 103 135 IPR003349 -
Vvi2g0820 876 SUPERFAMILY Clavaminate synthase-like 180 435 - -
Vvi2g0820 876 MobiDBLite consensus disorder prediction 783 797 - -
Vvi2g0820 876 FunFam Lysine-specific demethylase isoform A 97 446 - -
Vvi2g0820 876 ProSiteProfiles JmjC domain profile. 249 419 IPR003347 -
Vvi2g0820 876 SMART JmjN_1 101 142 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0820 Vvi-Chr2 8574199 8584549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0820 99 450 JUMONJI Transcription Factor Family AT2G34880 37.226 7.23e-63 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi2g0820 JmjC 5.5e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0820 - - vvi:100266131 1753.03