Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0818 ATGGAGTTGTTCCCAGCACAACCAGACTTGTCTCTGCAAATCAGCCCACCAAACAGCAAGCCATCGTCAGGGTGGAGGAGAGCAGAAGAAGAGGTGGATTTGGGGTTTTGGAAGAGAGCCTTGGACTCCAGGAACTCCATCTCTTCAATGACCAAACCAGATAGCTGTTTCGAGCTTTCGCTCTCGAATCCGAGGGCTACCTCTGAGTCTAACAACAGCAACCATTTTCATCTCCTTCAGAATGGCAACACCAATCTCCTCCATTCCTTTCAACAAAGCCAATACCCACATCATCATCACCATCAACACCAACTTCATCACCAGCTGTTTCAGCAGCAACAAGGATTCAGCCAAGAGCTTGGTTTCTTGAGACCCATAAGAGGAATTCCAGTCTACCAAAATCCTCCTTCTTTCCCATTTGCTCAGCAGCCCTTGGATTCTTCTATAGCTTCTTCCACTACGACCAACACTGCCGCCACCACCACTGGCTCAAGTCCTTTCCAGTCTCATCATCAAGGCCTAATTCGATCGAGATTTTTATCGAGGTTTCCGGCCAAGCGCAGCATGAGGGCGCCTCGGATGCGGTGGACTACGACCCTTCATGCTCGCTTTGTTCATGCTGTTGAGCTATTGGGTGGCCATGAAAGAGCTACACCCAAGTCTGTTCTTGAGCTCATGGATGTGAAAGATCTCACCTTGGCACATGTTAAATCTCATCTACAGATGTATCGAACTGTGAAGACTACTGATAGAGCAGCAGCTTCTTCAGGACAATCCGATGTGTACGAGAATGGGTCATCTGGAGATACTTCTGAGGATGTCATGTTTGACATTCAGAACCCGAGAAAATCTGAGCTATCAATTCAACAAGGAAGGCCAAATGTGCATCAAGAGAAGGATTACCATGGCCTCTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGCAAACAAAGGGATTCTGGAGGGAACACACCAACTCTTGAGGAGGACATGGATCCAAAGTGCTTAAGCTATGAAAGAATATCAGATGTAAGCTCATCAAACCTTTCAGGGACAAGCCCCAAGAAGCCCAATCTGGAGTTCACTTTGGGGAGGTCACATTGA 1107 0.4752 MELFPAQPDLSLQISPPNSKPSSGWRRAEEEVDLGFWKRALDSRNSISSMTKPDSCFELSLSNPRATSESNNSNHFHLLQNGNTNLLHSFQQSQYPHHHHHQHQLHHQLFQQQQGFSQELGFLRPIRGIPVYQNPPSFPFAQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSELSIQQGRPNVHQEKDYHGLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVSSSNLSGTSPKKPNLEFTLGRSH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0818 368 MobiDBLite consensus disorder prediction 315 334 - -
Vvi2g0818 368 MobiDBLite consensus disorder prediction 149 171 - -
Vvi2g0818 368 MobiDBLite consensus disorder prediction 249 271 - -
Vvi2g0818 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Vvi2g0818 368 MobiDBLite consensus disorder prediction 344 368 - -
Vvi2g0818 368 Gene3D - 191 248 - -
Vvi2g0818 368 MobiDBLite consensus disorder prediction 1 27 - -
Vvi2g0818 368 Pfam Myb-like DNA-binding domain 193 244 IPR001005 -
Vvi2g0818 368 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 367 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi2g0818 368 SUPERFAMILY Homeodomain-like 189 245 IPR009057 -
Vvi2g0818 368 MobiDBLite consensus disorder prediction 344 360 - -
Vvi2g0818 368 FunFam Myb family transcription factor 190 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0818 Vvi-Chr2 8528257 8532317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0818 1 365 G2-like Transcription Factor Family AT4G17695 38.243 1.24e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi2g0818 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0818 - - vvi:100250498 667.537