Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0810 ATGAGCTTTCAGGATCTCGAATCTGGGCGCCCTTTGGCTCAGTCCCGGCGAGATTACATCAATGCTAAGCAAGATCCGACGCAGGCCGTTGCTTCTGGCATTTTCCAGATCAATACCGCGGTTTCAACTTTTCAGCGACTCGTTAATACGCTTGGAACCCCCAAGGACACGTCAGAGCTACGGGAGAAGTTGCACAAGACGAGGCTACATATTGGGCAGTTAGTCAAGGATACCTCTGCTAAACTTAAGCAAGCTAGCGAAACAGATCATCATGCTGAAGTTAGTGCCAGCAAGAAGATTGCAGATGCTAAACTGGCAAAAGATTTTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAACGGCTGGCAGCAGAAAGGGAAACGGCATATACTCCTTTTGTTCCCCAGTCAGTTCTTCCTTCCAGCTATACGGCAAGTGAGATAGATGTAGGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATTGAAGAAAGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAGGTGAATGAGATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAAATCCCAACTTGCAAAAGCATCAAAGACCCAACGATCAAATTCATCTCTGACCTGCTTGCTGTTGGTGATATTTGGGATCATCCTCCTCATTGTGATCATCGTAATTGCAGCTTAA 825 0.4582 MSFQDLESGRPLAQSRRDYINAKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTSELREKLHKTRLHIGQLVKDTSAKLKQASETDHHAEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQSVLPSSYTASEIDVGPDKSPEQRALLVESRRQEVLLLDNEIVFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGVMIDDIGSNIDGAQAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIILLIVIIVIAA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0810 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi2g0810 274 SMART tSNARE_6 176 243 IPR000727 -
Vvi2g0810 274 FunFam Syntaxin-22 like 21 134 - -
Vvi2g0810 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Vvi2g0810 274 Gene3D - 17 134 - -
Vvi2g0810 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Vvi2g0810 274 SMART SynN_4 15 128 IPR006011 GO:0016020
Vvi2g0810 274 CDD SNARE_Qa 184 242 - -
Vvi2g0810 274 CDD SynN 24 149 IPR006011 GO:0016020
Vvi2g0810 274 Pfam SNARE domain 217 269 IPR000727 -
Vvi2g0810 274 PANTHER SYNTAXIN 27 265 IPR045242 -
Vvi2g0810 274 FunFam Syntaxin-22 like 174 274 - -
Vvi2g0810 274 Gene3D - 174 274 - -
Vvi2g0810 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0810 Vvi-Chr2 8287614 8297867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0810 1 262 SNARE and Associated Proteins AT5G46860 79.389 1.12e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0810 - K08488 vvi:100257399 452.21