Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0805 ATGGAGGGAGCAAGCGGCAGTAGCAGCGCCGTGAATAGTGGTGGTGGTGGTGGTGGTGCTCCGCCTCCTCATCCGATTCCGAATTCGAATGCGCCGCCACCGTTCCTTAGCAAGACCTACGATATGGTCGATGATCCTGCCACTAATTCGATCGTGTCCTGGAGTCCAACCAACAATAGCTTCGTGGTTTGGAACCCTCCCGAGTTCGCAAGAGACCTTTTACCGAAGTACTTCAAGCACAACAATTTTTCGAGCTTTGTGAGGCAGTTGAACACATATGGATTCAGGAAGGTTGATCCAGACCGTTGGGAATTTGCAAATGAGGGATTTTTGAGGGGTCAAAAACACCTATTGAGGAGTATAAATCGGCGAAAACCTGCCCATGGACATAATCTTCAACAGCCACAGCAATCACATTCACAGGGTTCATCAGTAGGAGCTTGTGTAGAGGTGGGCAAGTTTGGGTTGGAGGAAGAGGTAGAAAGGCTTAAAAGGGACAAAAATGTGCTTATGCAGGAACTTGTCAGGTTGAGGCAACAGCAACAGACAACTGATAACCAGTTGCAGACCATGGTGCAGCGCCTTCAGGGAATGGAGCAGCGACAGCAACAAATGATGTCTTTCCTGGCAAAGGCTGTGCAGAGCCCTGGCTTTTTGGCGCAGTTTGTACAGCAGCAAAATGAGAGCAACAGACGCATAACTGAGGCCAACAAGAAACGGAGGCTCAAGCGGGAAGATACTGCTGAGGGTGAGCATTCTGCTGCTCCTTCTGATGGCCAGATTGTTAAGTACCAGCCATTAATGAATGAGGCCACTAAAGCAATGCTCAGGCAGATGGTGAAAATGGATACTTCTGCCTTTAGCAACGATTCTGATAATTTCTTGATTGGTGATGTTTCCTCATCATCCAATGGAGTTGAGAAAGGGGGCTCTTCAACCTGTGTATCGGGTGTGACTCTTCAAGAGGTCCCACCAACTTCTTTGCCAGTTGCTTCGGGAGTTCCAAGTCATGACCCCCCCTCAGCTCCTATATCTGAAATTCAATCTCCCCCAGATATATGCGCACTGGTTGGGGCACAAGAAGCAGTGCCCATCTCTATTGCCCTGCCAGATGTAATATTGCCCGAGTTATCTCAAATACCAGAAATGTTGCCGAAAAGTATTGTGGACATTCACAAAGATGATTATGTGGGACCCCAATCAGGGAATGTTGAATTCATGGATCCTATTTCATTGGGAATTGATGGAGCAATGCCGATAGATATCGACAACATCTCTGCTGATCCTGACATAGATGCCTTGCTAGATGCAAGTTCTAACTTTTGGGAGGACCTCCTTGTGGACAATGATGAGGTTGAATCAACTCCACTTGAGGACACTACCAAGGGAAATGAAATGCAGCCATCAGAAAATGGATGGGACAAGGCGCAGCATATGGCAAAGCTTACAGAACAGATGGGCCTTCTTACATCGGATACAAAAAGGATTTGA 1491 0.4742 MEGASGSSSAVNSGGGGGGAPPPHPIPNSNAPPPFLSKTYDMVDDPATNSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQQPQQSHSQGSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKREDTAEGEHSAAPSDGQIVKYQPLMNEATKAMLRQMVKMDTSAFSNDSDNFLIGDVSSSSNGVEKGGSSTCVSGVTLQEVPPTSLPVASGVPSHDPPSAPISEIQSPPDICALVGAQEAVPISIALPDVILPELSQIPEMLPKSIVDIHKDDYVGPQSGNVEFMDPISLGIDGAMPIDIDNISADPDIDALLDASSNFWEDLLVDNDEVESTPLEDTTKGNEMQPSENGWDKAQHMAKLTEQMGLLTSDTKRI* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0805 496 MobiDBLite consensus disorder prediction 1 42 - -
Vvi2g0805 496 Gene3D - 28 125 IPR036388 -
Vvi2g0805 496 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0805 496 SUPERFAMILY "Winged helix" DNA-binding domain 31 124 IPR036390 -
Vvi2g0805 496 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 315 IPR027725 -
Vvi2g0805 496 MobiDBLite consensus disorder prediction 232 252 - -
Vvi2g0805 496 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0805 496 MobiDBLite consensus disorder prediction 226 260 - -
Vvi2g0805 496 FunFam Heat shock transcription factor 1 28 125 - -
Vvi2g0805 496 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0805 496 Coils Coil 153 180 - -
Vvi2g0805 496 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0805 496 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g0805 496 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0805 Vvi-Chr2 8223134 8234512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0805 9 493 HSF AT1G32330 56.574 2.30e-171 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi2g0805 HSF_DNA-bind 3.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0805 K09419 - vvi:100243710 915.605