Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0799 ATGAGAAGAGGCAGAAGAGGAAGAAAACTGGGCCGCCCTGTTCAAGCAGACGATAATTGGAGGCTCAAATCCTCTCTTCACAATCAGAGCCAACCCGACACCACTTCTCATGAAAATCTCCAATCCCCTCAACCCACACACGATTCCGATTTTCATCCCAAATCTCAAAGTCGCCCAAACTCCAAATGGGTATCGCGGAATCAGCGTGCCCATGTCGCCAAAACCACGTTTGTTAAGAAATCCGAAGTGGGTTCCGGCAGTGAGGTGAACGAACAAAAACAAGAAGAAGATGAACAAAAACAAGGGGAAGAAGAAGAGGGAGAAGGTCCTAGAAACGAGCAGACTGATTTGAATGAAGAGGTGGTTGAGGCTTCTGACTTTACCCATGATGTTGATGATGTTGGAAGTAGATTAGAGAAGTTAGTCGTGGGAGTGGAAGAGCCAGAATTGTCGGAGGATCGGCTAAGAATCAATGCCCAGTTGCAGGAGGACGAGTTACTTGCTATGCAGTCCATATATGGTGACAATGTCTTTATCCTTGATAGACAGCAAGGACTGCAATCTTTTCAGATCCATGTACATATCGAAGCCCTGGGTGAACTTACTGTAACTGCAAAGCTAAATTCATCAAGTGGCCGTACAACTGAAAGTGATGGTTCAGATGATTTCTCATACTCTTTCAATGTTCAGTATCTCCCACCAATTGTGTTGACATGTTTGCTACCCAAAGCATACCCTAGTCATCTCCCTCCTTATTTTACCATTTCTGTTCAGTGGTTGGATTCCATTAGTATTTCCAAACTCTGCTCTATGCTGGATTCATTGTGGAAGGAACAACCAGGACAGGAAGTTTTATACCAGTGGGTGGAATGGCTACATAGTTCGTGTCTTTCTTATCTTGGATTTGATAAAGAAATAGTTCTTGGTCCTTATAACATGGGAAATTCTGAAGATAGGCGTGCGATTTCAGGAAGTGTTTCCCTTGACGTTGATATTCCTTCAATGAAGAGTTACAATGATGAGAAACGCCATGAGAATTTTTCCAAAAACTTTCATGAATGCTGCATCTGTTTCACTGAATATGCAGGTACTGAATTCATCAAATTGCCATGCCAGCATTTCTTCTGCTGGAAATGCATGAAAACTTATTCTGAGATGCATGTAAAGGAAGGCACCGGAAGCCAGCTTCTTTGTCCAGAAACAAAATGCAGGGCCATGGTTCCACCTGTTTTGTTGAAACGATTGCTTGGTGATGAAGAATTTGAACATTGGGAGTCCTTAATGCTGCAGAAAACACTTGAGTCAATGTCTGATATGACCTATTGCCCGAGATGTGAAACAATCTGCATAGAGGATGAAGACCAGCATGCACAATGCTCAAAGTGCTTCTTTAGCTTCTGTACACTTTGCCGGGACCGCCGCCATGTGGGATTAGAATGCATGACTCCAGAAGTGAAGCTTCATATCTTGCAGGGGCGCCAGCATTCATCTCAGCTGAAGGATGAACAAAGGAAAAAGGAGCGTGAAATGATCAATGAGCTTCTTAGTGTTAAGGAAATACTCCGTGATGCTAAGCAATGCCCATCTTGTAAGATGGCAATTTCCCGAACTGAAGGTTGCAACAAGATGGTCTGCAATAACTGTGGCCAGTATTTCTGCTATCGCTGTAACCAGGCTATTGATGGATATGAACATTTCAGGGATAGTGCATGTGAACTTTTCCCACAAGAAATGATTCAGAACTGGGAATGGGACTGGGAAGCACGGCTTAATCAACGCCAAGTTGTGGGTCAGATTCAGGCTGAACTCTTTGCTGATCGTGGTCACTCATGCCCCATATGTCGTCAAATCAATGTAAAGGTCGGCAATAACAACCACATATTTTGTTGGTCATGCCAGAGCCACTATTGTTACTTATGCAAAGAGATTGTGAGGCGCAGCTCTCAGCATTTTGGGCCCAAGGGTTGCAAACAACATACGGTGGGATAG 1989 0.4379 MRRGRRGRKLGRPVQADDNWRLKSSLHNQSQPDTTSHENLQSPQPTHDSDFHPKSQSRPNSKWVSRNQRAHVAKTTFVKKSEVGSGSEVNEQKQEEDEQKQGEEEEGEGPRNEQTDLNEEVVEASDFTHDVDDVGSRLEKLVVGVEEPELSEDRLRINAQLQEDELLAMQSIYGDNVFILDRQQGLQSFQIHVHIEALGELTVTAKLNSSSGRTTESDGSDDFSYSFNVQYLPPIVLTCLLPKAYPSHLPPYFTISVQWLDSISISKLCSMLDSLWKEQPGQEVLYQWVEWLHSSCLSYLGFDKEIVLGPYNMGNSEDRRAISGSVSLDVDIPSMKSYNDEKRHENFSKNFHECCICFTEYAGTEFIKLPCQHFFCWKCMKTYSEMHVKEGTGSQLLCPETKCRAMVPPVLLKRLLGDEEFEHWESLMLQKTLESMSDMTYCPRCETICIEDEDQHAQCSKCFFSFCTLCRDRRHVGLECMTPEVKLHILQGRQHSSQLKDEQRKKEREMINELLSVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCNQAIDGYEHFRDSACELFPQEMIQNWEWDWEARLNQRQVVGQIQAELFADRGHSCPICRQINVKVGNNNHIFCWSCQSHYCYLCKEIVRRSSQHFGPKGCKQHTVG* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0799 662 SMART ring_2 354 401 IPR001841 -
Vvi2g0799 662 SMART ring_2 611 640 IPR001841 -
Vvi2g0799 662 SMART ring_2 527 556 IPR001841 -
Vvi2g0799 662 MobiDBLite consensus disorder prediction 1 118 - -
Vvi2g0799 662 FunFam RBR-type E3 ubiquitin transferase 150 301 - -
Vvi2g0799 662 CDD BRcat_RBR_RNF14 433 486 - -
Vvi2g0799 662 Pfam RWD domain 160 294 IPR006575 GO:0005515
Vvi2g0799 662 Gene3D Ubiquitin Conjugating Enzyme 151 301 IPR016135 -
Vvi2g0799 662 SMART RWD2001b 164 299 IPR006575 GO:0005515
Vvi2g0799 662 Pfam IBR domain, a half RING-finger domain 519 560 IPR002867 GO:0008270
Vvi2g0799 662 Pfam IBR domain, a half RING-finger domain 423 480 IPR002867 GO:0008270
Vvi2g0799 662 MobiDBLite consensus disorder prediction 104 118 - -
Vvi2g0799 662 FunFam RBR-type E3 ubiquitin transferase 349 433 - -
Vvi2g0799 662 ProSiteProfiles RWD domain profile. 164 299 IPR006575 GO:0005515
Vvi2g0799 662 SUPERFAMILY RING/U-box 513 566 - -
Vvi2g0799 662 Gene3D - 494 602 - -
Vvi2g0799 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 437 IPR013083 -
Vvi2g0799 662 ProSiteProfiles Zinc finger RING-type profile. 354 402 IPR001841 -
Vvi2g0799 662 SUPERFAMILY UBC-like 158 294 IPR016135 -
Vvi2g0799 662 SUPERFAMILY RING/U-box 349 436 - -
Vvi2g0799 662 MobiDBLite consensus disorder prediction 21 88 - -
Vvi2g0799 662 FunFam RBR-type E3 ubiquitin transferase 495 605 - -
Vvi2g0799 662 ProSiteProfiles TRIAD supradomain profile. 350 577 IPR044066 -
Vvi2g0799 662 Coils Coil 86 106 - -
Vvi2g0799 662 ProSitePatterns Zinc finger RING-type signature. 371 380 IPR017907 -
Vvi2g0799 662 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 161 572 IPR031127 GO:0004842|GO:0016567
Vvi2g0799 662 SUPERFAMILY RING/U-box 604 658 - -
Vvi2g0799 662 SMART ibrneu5 422 480 IPR002867 GO:0008270
Vvi2g0799 662 SMART ibrneu5 509 571 IPR002867 GO:0008270
Vvi2g0799 662 SUPERFAMILY RING/U-box 423 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0799 Vvi-Chr2 8123287 8139000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0799 353 574 ARIADNE family AT2G31780 25.328 2.85e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0799 K11971 - vvi:100262589 1356.27