Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0793 ATGGACGGCCCAAACCCATTTTCAGGCCAGAAGAAGGAAGGTGAAGAAGGGAAGAAGCCACGTAGAGTGCCTTTGCTGAAGCTATTTGCGTTTGCAGACCTTTATGACTGTTTTCTCATGGCTGTTGGGTCCGTTGGTGCTTGCATTCATGGAGCTTCCGTGCCCGTTTTCTTTATTTTCTTTGGAAAGTTGATAGATATTATTGGATTGGCCTATCTTTTTCCTGCCGCTGCTTCCCATAAAGTTGCCAAGTATTCATTGGATTTTGTATACCTGAGCTTGGTTATATTATTTTCATCATGGGCTGAGGTTGCTTGTTGGATGCATACTGGGGAAAGGCAAGCAGCAAAGATGAGAATGGCCTATGTGAGATCCATGCTGAATCAAGATATTAGTCTTTTTGACACTGAAGCAACCACTGGAGAGGTCATTTCTGCAATTACCAGTGACATTATTGTTGTTCAAGATGCTCTTTCTGAGAAGGTGGGCAACTTCATGCACTATATAAGCCGGTTCATCGCTGGCTTTGCAATTGGGTTTATTAGAGTATGGCAAATTAGTCTTGTGACACTTGCTATTGTTCCCTTAATTGCCATTGCTGGTGGTGTCTATGCTTATATTGCAACTGGACTCATTGCCAGAGTTCGAAAATCCTATGTGAAGGCTGGTGAAATTGCTGAGGAGGTGATTGGGAATGTTAGGACAGTCCAAGCATTTGCAGGAGAAGAAAAAGCAGTAAAATTATACAAAACAGCTCTCTCCAATACTTACATATATGGAAGGAAAGCAGGCTTAGCCAAAGGTCTGGGGCTGGGTTCCATGCACTGTGTCCTTTTCCTTTCATGGGCATTGCTTGTTTGGTTCACTAGTGTTGTTGTTCATAAGAATATTGCCAATGGAGGAGAGTCTTTCACCACCATGCTTAATGTTGTTATTGCAGGCCTGTCACTAGGACAGGCGGCCCCAGACATTTCTGCATTCATTCGAGCCAAGGCATCCGCCTATCCCATTTTTGAGATGATAGAGAGGAACACAATCAGCAATACTAACTCCAAAACTGGACGGCAACTACACAAACTAGAGGGCCACATTCAATTCAGGGATATTTCCTTTAGTTATCCTTCTCGTCCTGATATACTTATCTTTAATAAGCTGTGTTTTGATATCCCTTCTGGGAAGATTGTGGCCCTTGTGGGAGGAAGTGGATCTGGAAAAAGCACTGTCATATCTTTGATTGAACGTTTCTATGAGCCTCTTGCTGGAGAAATACTACTAGATGGAAATGATATCAGGCAGCTTGACCTACAGTGGCTCAGGCAGCAAATCGGGTTGGTCAATCAAGAGCCTGCACTTTTCGCTACAAGCATCAGGGAGAACATTCTCTATGGAAAAGATGATGCCACCCTTGATGAGATTACACGAGCAGCCAAGCTTTCAGAGGCTATTTCTTTCATTAACAACCTCCCTGATAGATATGAAACTCAGGTGGGGGAGAGAGGAATACAGTTATCAGGTGGCCAGAAGCAAAGGATTGCAATAGCACGTGCGATTGTGAAAAATCCCTCGATTCTGCTACTGGATGAAGCTACAAGTGCACTTGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCACTTGATCGTGTTATGGTGGGACGAACAACTGTTGTAGTGGCCCATAGACTTTCTACCATAAGGAATGCTGATATGATAGCCGTCGTTCAACATGGGAAGATAGTGGAAACTGGGAGCCATGAGGAGCTCATTTCGAACCCAAGCAGTGCTTATGCATCACTTGTTCAACTGCAGGAGACAGCTTCTCTGAAACGCCACCCTTCACAGGGACCTACCATGGGAAGGCCACTAAGCATGAAGTGTTCACGGGAATTATCACGTACAACGACAAGCTTTGGTGCAAGTTTTCATTCTGATAGAGAATCTGTTGGCCGGATTGGTGCTGAGGGAGTGGAACCTGTAAAGTCAAAACAAGTTTCGGCAAGAAGATTGTATTCCATGGTGGGTCCTGACTGGTATTACGGGCTGGTAGGCACCATTTGTGCCCTAATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAGTCACTGAGGCTCTCGTATCCTATTACATGGACTGGGACACAACACGCCATCAGGTTAAGAAGATTGCATTCCTCTTCTGTGGAGGTGCTTTCATAACAGTCATTGTTCATGCCATAGAGCACACATGCTTTGGGATCATGGGCGAGCGGCTCACTCTTCGCATTCGAGAAATGTTATTTTCTGCCATTTTGGGGAATGAGATTGGATGGTTTGATGATGCAAACAACACAAGTTCTATGCTTTCATCCCGTCTAGAGAGTGATGCAACTCTGTTCAGAACCATAATTGTTGATCGTTCTACAATTCTCATACAGAATTTAGGTTTGGTTGTCACCTCATTCATCATTGCCTTCATCTTGAACTGGAGGATCACACTTGTCGTCTTGGCTACATATCCATTGATCATCAGTGGTCACATCAGTGAGAAACTCTTCATGCAAGGCTATGGTGGAAATCTGAGCAAGGCCTATCTCAAAGCTAACATGATTGCCGGTGAGGCTGTGAGTAACATGCGCACTGTTGCTGCATTTTGCTCTGAAGAGAAGGTCCTTGACCTTTACTCTCGGGAGCTTGTGGAGCCTGCCAATAAGTCATTTACTCGTGGTCAAATTGCTGGCTTATTCTATGGGATCTCCCAGTTCTTCATCTTCTCATCCTATGGCCTTGCTTTATGGTATGGCTCTATACTGATGGGGAAAGAGCTTGCTAGCTTTAAATCCGTGATGAAATCATTTATGGTTCTGATTGTAACGGCATTAGCCATGGGTGAGACTCTGGCCCTGGCCCCAGACCTTCTAAAGGGGAACCAAATGGTGGCATCAGTGTTTGAATTGATGGACAGAAAGACGGAGGTAATGGGTGATGCTGGAGAAGAGCTCACAAGAGTGGAGGGTACAATTGATCTGAAGGGTATCGAGTTTAGGTACCCTTCCAGGCCAGATGTAGTGATTTTCAAGGACTTTGATCTAAGAGTTCGCGCAGGCAAAAGCATGGCATTAGTGGGGCAAAGTGGCTCTGGCAAGAGTTCAGTTCTTTCTCTTATACTCAGGTTTTACGACCCAATCGCTGGGAAAGTGATGATTGATGGGAAAGACATCAAGAAACTCAAGCTCAAATCCCTTAGAAAACACATTGGTCTAGTACAACAAGAACCAGCTCTCTTTGCCACATCAATCTTTGAAAACATCCTTTATGGAAAAGAGGGTGCTTCTGAAGCTGAAGTAATGGAAGCAGCTAAGCTTGCTAATGCACATAGTTTCATCTGTGGACTCCCTGAGGGCTATTCAACCAAAGTTGGAGAGAGAGGGGTGCAGCTATCTGGTGGCCAGAAACAAAGAGTAGCCATTGCCCGAGCTGTCCTAAAGAACCCAGAAATCTTGCTACTAGATGAAGCCACCAGTGCTTTAGACGTGGAGTCAGAGCGTGTGGTGCAACAAGCTCTAGACAGGTTGATGGTGAACCGAACAACAGTCCTGGTGGCACATAGGCTGTCCACCATAAAAAATGCAGACCAAATATCAGTTATACAAGACGGGAAGATAATAGAGCAAGGGACTCATTCAACTCTTGTAGAGAACAGGGAAGGAGCATATTTTAAGCTAATTAACCTACAGCAACAACAACAACAGCAATAA 3732 0.4475 MDGPNPFSGQKKEGEEGKKPRRVPLLKLFAFADLYDCFLMAVGSVGACIHGASVPVFFIFFGKLIDIIGLAYLFPAAASHKVAKYSLDFVYLSLVILFSSWAEVACWMHTGERQAAKMRMAYVRSMLNQDISLFDTEATTGEVISAITSDIIVVQDALSEKVGNFMHYISRFIAGFAIGFIRVWQISLVTLAIVPLIAIAGGVYAYIATGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEEKAVKLYKTALSNTYIYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKASAYPIFEMIERNTISNTNSKTGRQLHKLEGHIQFRDISFSYPSRPDILIFNKLCFDIPSGKIVALVGGSGSGKSTVISLIERFYEPLAGEILLDGNDIRQLDLQWLRQQIGLVNQEPALFATSIRENILYGKDDATLDEITRAAKLSEAISFINNLPDRYETQVGERGIQLSGGQKQRIAIARAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADMIAVVQHGKIVETGSHEELISNPSSAYASLVQLQETASLKRHPSQGPTMGRPLSMKCSRELSRTTTSFGASFHSDRESVGRIGAEGVEPVKSKQVSARRLYSMVGPDWYYGLVGTICALIAGAQMPLFALGVTEALVSYYMDWDTTRHQVKKIAFLFCGGAFITVIVHAIEHTCFGIMGERLTLRIREMLFSAILGNEIGWFDDANNTSSMLSSRLESDATLFRTIIVDRSTILIQNLGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANMIAGEAVSNMRTVAAFCSEEKVLDLYSRELVEPANKSFTRGQIAGLFYGISQFFIFSSYGLALWYGSILMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFELMDRKTEVMGDAGEELTRVEGTIDLKGIEFRYPSRPDVVIFKDFDLRVRAGKSMALVGQSGSGKSSVLSLILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIFENILYGKEGASEAEVMEAAKLANAHSFICGLPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMVNRTTVLVAHRLSTIKNADQISVIQDGKIIEQGTHSTLVENREGAYFKLINLQQQQQQQ* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0793 1243 CDD ABC_MTABC3_MDL1_MDL2 999 1236 - -
Vvi2g0793 1243 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Vvi2g0793 1243 SUPERFAMILY ABC transporter transmembrane region 666 983 IPR036640 GO:0005524|GO:0016020
Vvi2g0793 1243 PANTHER ABC TRANSPORTER B FAMILY 10 605 IPR039421 -
Vvi2g0793 1243 Gene3D - 354 603 IPR027417 -
Vvi2g0793 1243 FunFam ABC transporter B family member 4 354 609 - -
Vvi2g0793 1243 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Vvi2g0793 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Vvi2g0793 1243 SMART AAA_5 391 583 IPR003593 GO:0016887
Vvi2g0793 1243 SMART AAA_5 1026 1198 IPR003593 GO:0016887
Vvi2g0793 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Vvi2g0793 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 984 - -
Vvi2g0793 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 602 IPR027417 -
Vvi2g0793 1243 Gene3D ABC transporter type 1, transmembrane domain 27 968 IPR036640 GO:0005524|GO:0016020
Vvi2g0793 1243 Gene3D - 989 1243 IPR027417 -
Vvi2g0793 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Vvi2g0793 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0793 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1237 IPR027417 -
Vvi2g0793 1243 FunFam ABC transporter B family member 19 989 1238 - -
Vvi2g0793 1243 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Vvi2g0793 1243 Pfam ABC transporter transmembrane region 45 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0793 1243 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi2g0793 1243 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Vvi2g0793 1243 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Vvi2g0793 1243 SUPERFAMILY ABC transporter transmembrane region 19 334 IPR036640 GO:0005524|GO:0016020
Vvi2g0793 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0793 Vvi-Chr2 7964138 7972385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0793 2 1243 Calmodulin-binding Proteins AT2G36910 48.815 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0793 K05658 - vvi:100248951 2349.32