Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0792 ATGGTTAGATCTCCATGTTGTGATGATGGCAGTTTGAAGAAGGGGCCTTGGACACCGGACGAGGATCAGAAGCTGGTTGATTATATCAAGAGACATGGCCATGGAAGTTGGAGAGCACTCCCCAAACTCGCAGGTCTGAACAGGTGCGGTAAGAGTTGCAGACTAAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGAGGTAAGTTCTCTGACGAAGAAGAGCGAATCATAATCAAACTTCATTCAGTACTTGGAAACAAGTGGTCAAGGATAGCTGTTCATCTTCCTGGACGGACTGATAATGAAATCAAGAACTTTTGGAACACCCATGTCAAGAAAAAGTTTTTGCAAATGGGTCTTGATCCAAATACCCACCAGCCAAGAGCTGATCTCAATTCCTTGGTGAATCTTTCTCAGTTACTTGCAACAGCGAACTTCAGCAATTTGACGAGTCCCTTGGAGGACGCCCTCAGGTTACAGACCGATGCCACTCGATTGACCAAAATCCAACTCTTGCAAAACATATTGCAGATCATAAATACAGGTAGTACACTTTCTAGAAATATAGAGGGAGCTAGTCACCAGTGGTCTCGTAATCTTACCCCTACCCCATTGGAAGGATTTGTTAATGGGACAAGCACCCTCTACACTGAGGATCCCATGCTGGCGCCAGCGGAATTTCCAAACCCAGGAGTAACCCCTGGATCCCACAATGACTACCAAGCAATTTCCAACTCATGGGCATGCATTGACGGTGGATTCGGATCAGAAGTTCATAATTTCAACAATAACTGCTCGAGCAGTTCCTACGATATTCGAGCAGAACAGCCACTTCCTGCATTAGTCTCAGTTTCTCCTGAATGTTCCAGTGTCAATCAAACGGAAAGCAAAATGAACCTGCCTTGCATCTCCACTCACTCATCTACCTCCAACATCTTTGAAGCTTGGGGAGAACTTATGGATGATGAAACCAGTGTCTCCTACTGGAAGGATATTCTAGGCCAGTATTGA 1014 0.4517 MVRSPCCDDGSLKKGPWTPDEDQKLVDYIKRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEERIIIKLHSVLGNKWSRIAVHLPGRTDNEIKNFWNTHVKKKFLQMGLDPNTHQPRADLNSLVNLSQLLATANFSNLTSPLEDALRLQTDATRLTKIQLLQNILQIINTGSTLSRNIEGASHQWSRNLTPTPLEGFVNGTSTLYTEDPMLAPAEFPNPGVTPGSHNDYQAISNSWACIDGGFGSEVHNFNNNCSSSSYDIRAEQPLPALVSVSPECSSVNQTESKMNLPCISTHSSTSNIFEAWGELMDDETSVSYWKDILGQY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0792 337 CDD SANT 69 112 IPR001005 -
Vvi2g0792 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Vvi2g0792 337 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi2g0792 337 CDD SANT 16 61 IPR001005 -
Vvi2g0792 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi2g0792 337 SMART sant 13 63 IPR001005 -
Vvi2g0792 337 SMART sant 66 114 IPR001005 -
Vvi2g0792 337 Gene3D - 69 115 - -
Vvi2g0792 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi2g0792 337 FunFam MYB-related transcription factor 13 66 - -
Vvi2g0792 337 FunFam Transcription factor MYB39 69 130 - -
Vvi2g0792 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi2g0792 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi2g0792 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi2g0792 337 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi2g0792 337 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0792 Vvi-Chr2 7942404 7943694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0792 1 334 MYB Transcription Factor Family AT5G16770 44.382 2.76e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi2g0792 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0792 K09422 - vvi:100243804 669.463