Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0782 ATGGATAACGGCCGGGAAGCTGGGTTTTCAGGGAGTGTTGGTGGTGGTGTTGATAATTGGATTCCGGGGTCTAGTGATCAATTAGTATGGGCAACTGAGGATGATTATGCAGTTTGGAATGGGGATGGATCGGGTGACACTCCCTCCAACTCGAATTATGAGGGAAGGCAATCTCAAAGTCGGTCTGGAAGTGAACCCCCAAACAAGAAATCTAGAAACTCACAGGTAGTGGATTCCCAAGGCAATGTGTTTGGTCGGGACAGGGATTTGCCTTCTAACCGATCAAAAGCAATTGGGAAAATGTTCTTTAAGACCAAGCTCTGTTGTAAATTCCGTGCTGGGACTTGCCCATATGTGACCAATTGCAATTTTGCTCATAGCATTCAAGAGCTTAGAAGACCGCCTCCAAATTGGCAAGAAATTGTGGCAGCACATGACGAAGAACGAGGCGTGTCCTCGGAGCCAAGGGAGGAGTTTCAAATTCCATCAATTGGATCCTCTAGTTTTGGTGTGGAGACTCAAAGGTCTTACAAGGGGCGTCATTGTAAGAAGTTCTACACTGATGAGGGGTGCCCATATGGAGATAACTGCACTTTTCTTCATGATGAGCAGTCAAAGGCTCGGGAGAGTGTGGCTATAAGTTTGGGCCCCGGTGCAGGTGGTGGGTATAGTAGTGGTAGTGGTAGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGGGAGTGGATCAAATATCAAGCCTTCCAATTGGAAAACCAGGATTTGTAATAAGTGGGAGCTTACAGGGTATTGCCCGTTTGGGAGCAAGTGCCATTTTGCTCATGGAATGGGAGAACTACACCGTTATGGTGGGGGCCTCGTGGATGAATCTAGAGATTCTACTTCTGCACCTCCTGACTCAAAGCAGGGAGGGGTGCCTTCAAAACCTCCATCAGATGCTGTGGTTGCATTCGTCACTTCAGTTCCCTTAGTCGCTTCTGTCCCGCATTCAGATGTTTACCATGCTGGAGTTCCATCCCAACGGCCGACTAGTGTAATCCAGAGACCTGGGCAGAGAACTCAGAAGAAATGGAAGGGTCCTGACAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATGA 1185 0.4886 MDNGREAGFSGSVGGGVDNWIPGSSDQLVWATEDDYAVWNGDGSGDTPSNSNYEGRQSQSRSGSEPPNKKSRNSQVVDSQGNVFGRDRDLPSNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIQELRRPPPNWQEIVAAHDEERGVSSEPREEFQIPSIGSSSFGVETQRSYKGRHCKKFYTDEGCPYGDNCTFLHDEQSKARESVAISLGPGAGGGYSSGSGSGSGGGGGGGGGGGGSGGGGGGGGGGGGGGGSGSNIKPSNWKTRICNKWELTGYCPFGSKCHFAHGMGELHRYGGGLVDESRDSTSAPPDSKQGGVPSKPPSDAVVAFVTSVPLVASVPHSDVYHAGVPSQRPTSVIQRPGQRTQKKWKGPDKISRIYGDWIDDIE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0782 394 FunFam Zinc finger CCCH domain-containing protein 98 134 - -
Vvi2g0782 394 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Vvi2g0782 394 MobiDBLite consensus disorder prediction 222 241 - -
Vvi2g0782 394 Gene3D - 98 133 - -
Vvi2g0782 394 Gene3D - 262 300 - -
Vvi2g0782 394 Gene3D - 171 208 - -
Vvi2g0782 394 Pfam CCCH-type zinc finger 180 202 IPR041367 -
Vvi2g0782 394 SMART c3hfinal6 176 203 IPR000571 GO:0046872
Vvi2g0782 394 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Vvi2g0782 394 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Vvi2g0782 394 FunFam Zinc finger, CCCH-type 170 208 - -
Vvi2g0782 394 MobiDBLite consensus disorder prediction 304 330 - -
Vvi2g0782 394 MobiDBLite consensus disorder prediction 352 378 - -
Vvi2g0782 394 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g0782 394 FunFam Zinc finger CCCH domain-containing protein 263 300 - -
Vvi2g0782 394 PANTHER CCCH ZINC FINGER/TIS11-RELATED 257 316 IPR045877 GO:0003729
Vvi2g0782 394 SUPERFAMILY CCCH zinc finger 265 299 IPR036855 GO:0046872
Vvi2g0782 394 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
Vvi2g0782 394 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Vvi2g0782 394 SUPERFAMILY CCCH zinc finger 100 133 IPR036855 GO:0046872
Vvi2g0782 394 MobiDBLite consensus disorder prediction 43 81 - -
Vvi2g0782 394 MobiDBLite consensus disorder prediction 37 91 - -
Vvi2g0782 394 SUPERFAMILY CCCH zinc finger 175 204 IPR036855 GO:0046872
Vvi2g0782 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 127 IPR000571 GO:0046872
Vvi2g0782 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0782 Vvi-Chr2 7806134 7810149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0782 270 298 C3H Transcription Factor Family AT1G68200 62.069 3.56e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi2g0782 zf-CCCH 4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0782 - - vvi:100262704 733.791