Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0776 ATGGCACTCGAAGCTCTTTCTTCTAATGATCTCTTGAACTTCATCATCTATGAGACTATCTCAGCAACCCCATATACCTGCCATGCCCCCCTAGAGGCTGGTTTCTCATTGGAAAACCCTTTGAAGCCTCAAGATCTTGGTGGTGCTCTGGATACGCCTTCTACAGTGATGGACCCGCGATGCTCCATGGGACCGGAAACTTCCAACAGGAAACAAAATTTGGCGGTGCAAGGGCGAAAAAAGAGGAGGAGAAGGGCAAGGGTTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAGAGGAATCGCCGGAGACAGATGAATGAGCATCTCGCCATCTTACGCTCCCTCATGCCGGAATCTTACGTCCAAAGGGGTGACCAGGCCTCTATAGTAGGTGGTGCCATAGAATTTGTGAAAGAACTTGAGCACCTATTGCAGTCCCTTGAAGCTCGAAAGCACAAAATGGTGCAAGGAGTAAGAGAAAACGTTGATGACAGCAGCAGCAGCAGCAGTAGCAGCACCGGCACCGGCACCGGCACCGGCATCACCGCCAACAAATTCATGCCACCTCCTTTCTCGCAATTTTTCGTGTACCCTCAGTACACCTGGTCTCAAATGCCTAACAAGTATACTTCCAAGAGTAAGGCAGCAGTAGCAGATATTGAGGTCACTTTGATTGAAACCCATGCAAATCTTCGAATTCTCTCTCATAAAAGCCCTAGACTGCTCTCCAAGATGGTCACCGGTTTTCAGACTCTTTACCTCACCATTCTTCATCTCAATGTCACCACCGTGGACCCACTAGTCCTCTACTCCATTAGTGCCAAGGTCGAGGAAGGATGCCAGCTCACATCAGTAGATGACATAGCAGGGGCAGTTCACCACATGCTTAGAATAATTGAGGAGGAAGCTGCTGTCTTATGTTGA 948 0.4821 MALEALSSNDLLNFIIYETISATPYTCHAPLEAGFSLENPLKPQDLGGALDTPSTVMDPRCSMGPETSNRKQNLAVQGRKKRRRRARVCKNKEEAETQRMTHIAVERNRRRQMNEHLAILRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKHKMVQGVRENVDDSSSSSSSSTGTGTGTGITANKFMPPPFSQFFVYPQYTWSQMPNKYTSKSKAAVADIEVTLIETHANLRILSHKSPRLLSKMVTGFQTLYLTILHLNVTTVDPLVLYSISAKVEEGCQLTSVDDIAGAVHHMLRIIEEEAAVLC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0776 315 Coils Coil 145 165 - -
Vvi2g0776 315 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Vvi2g0776 315 PANTHER MAX DIMERIZATION, MAD 65 311 - -
Vvi2g0776 315 CDD bHLH_AtFAMA_like 100 161 - -
Vvi2g0776 315 MobiDBLite consensus disorder prediction 165 190 - -
Vvi2g0776 315 SMART finulus 103 154 IPR011598 GO:0046983
Vvi2g0776 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Vvi2g0776 315 MobiDBLite consensus disorder prediction 168 190 - -
Vvi2g0776 315 Gene3D - 89 164 IPR036638 GO:0046983
Vvi2g0776 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 167 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0776 Vvi-Chr2 7639020 7641095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0776 89 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.822 2.72e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi2g0776 HLH 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0776 - - vvi:100248894 596.275