Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0775 ATGGAGAGGGAGAGAAGAGAAAATCAGGACATAAACGAGGAATTGGAGGACAATCACAATCCGGCACTCCATGAGCCATGGCATGTTGCTACCACTGGCTTGGACGAGGCTCTGATCAAGTCCATCACTCTCTGTAAGTACAAGAAGGGAGATGGGTTGGTTGAAGGGACAGATTGCTCGGTTTGTCTCAGTGAGTTTGAAGAAGAAGAGAGCTTAAGGCTCTTGCCCAAGTGCAGTCATGCTTTCCATGTCCAGTGCATTGATACATGGCTTAAATCTCACTCCAATTGCCCTCTGTGTCGAGCTAATATTGTTCCTACTACTGTTTCACCGACTCAACTCCCTCCACCAGTGATGGAAAGTCCACTAAATAATGAACCTTCGCAGCAAAGCCAACTTGAGCATGAAAATGTAGCTGTAGGAGAAGATTTGGAAAGGGTTGCGGAAGAAGAGGAAATAATGCGCAATGAGGTAATCCCAAAGACCCCATCACGGGTTTTTAGCGATTTGGGGAATTCAGAGGAGAGAGATACCATAATTGAGATTAGAGATGAAGGAGAGCAACAGATACGGAGATCAATTTCCTTGGATTATTCATGTCAGACCCGTCTTTCAGTAGCCGACATTTTGCTCATGAACGAAGATGAAGATCCTCAGATGGGTGATTGCGATTGCCAGTTTCCAGGTCATGTTGGATCATCAAAAGTAGCAGTAGGAGAAATCAGCAAGTACAGCCATAGAAACAGGGTGTTGCACTGTGTGATGAGTCCTGTCTCAATGAAGAGATCATTCTCAAGCGGGAGATTGTTGTTCACTAGGCATGCCAGAGGACGGGATGGGATAATTCCCACATTCGAGAGAAGATTAGATTACTCATGA 879 0.4528 MERERRENQDINEELEDNHNPALHEPWHVATTGLDEALIKSITLCKYKKGDGLVEGTDCSVCLSEFEEEESLRLLPKCSHAFHVQCIDTWLKSHSNCPLCRANIVPTTVSPTQLPPPVMESPLNNEPSQQSQLEHENVAVGEDLERVAEEEEIMRNEVIPKTPSRVFSDLGNSEERDTIIEIRDEGEQQIRRSISLDYSCQTRLSVADILLMNEDEDPQMGDCDCQFPGHVGSSKVAVGEISKYSHRNRVLHCVMSPVSMKRSFSSGRLLFTRHARGRDGIIPTFERRLDYS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0775 292 PANTHER RING-H2 FINGER PROTEIN ATL16 19 229 IPR044600 GO:0016567|GO:0016740
Vvi2g0775 292 Pfam Ring finger domain 58 101 IPR001841 -
Vvi2g0775 292 SUPERFAMILY RING/U-box 53 107 - -
Vvi2g0775 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 107 IPR013083 -
Vvi2g0775 292 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g0775 292 FunFam RING-H2 finger protein ATL54 34 107 - -
Vvi2g0775 292 ProSiteProfiles Zinc finger RING-type profile. 59 101 IPR001841 -
Vvi2g0775 292 SMART ring_2 59 100 IPR001841 -
Vvi2g0775 292 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0775 Vvi-Chr2 7634074 7634952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0775 5 283 C3H Transcription Factor Family AT5G17600 38.255 3.22e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0775 - - vvi:100243705 579.711