Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0773 ATGGCGGCGCTGGAAGCTTCACTCTCCATCTTCTCACTCTACCGTTCTTCTTCCTCCAAATTACTCTTCTCTCATAGACCTCCACCCTCAATGAGTCTCCACTCCTCTGCTTTTATCCCTTCCATTTGTCTCAAATACCCTCTCTATCCTCTCCCCCTTCTCTACACCAACCCCACTACAAAGTTCAGCTTTGAGCTGTGCTCTTCAGTTCAGGAAATAGAAGTAGAAGCAAAACCAGAGCAAACCCAAGAGCCAAATCAGAAAAGAAAGCTCTTTGTCTTGAATTTGCCATGGTCTCTCTCTGTTGTGGACATCAAGAACCTTTTTGGGGAATGTGGAACTGTCACTGATGTGGAGATTATAAAGCAAAAGGATGGGAGGAGCAGGGGTTATGCCTTTGTTACAATGGATTCTGGAGAAGAAGCTCAGGCAGTTGTCGAGAAATTTGACTCTTATGAATTATCAGGGAGGATAATTAGGGTAGAGTTTGCAAAGAGATTCAAGAAACCTTCTCCTCCTCCTCCTCCTCCTCCAGCAGGTCCTCCTGCTGGAGAGACACGCCATAAGCTTTATGTGTCCAATCTTGCATGGAAAGTACGGTCTACCCATCTCAGAGAATTTTTCTCCAGTAATTTTAATCCTGTTTCAGTTAGAGTTGTCTTTGATAGCCCTTCTGGAAGATCTGGTGGTTATGGGTTTGCCTCATTTGCCACAAAGGAGGAAGCAGAGGCTGCGATTTCTGCTTTGGATGGGAAGGTATAA 762 0.4501 MAALEASLSIFSLYRSSSSKLLFSHRPPPSMSLHSSAFIPSICLKYPLYPLPLLYTNPTTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0773 253 CDD RRM_SF 91 162 - -
Vvi2g0773 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Vvi2g0773 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Vvi2g0773 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 252 IPR000504 GO:0003723
Vvi2g0773 253 Gene3D - 68 171 IPR012677 -
Vvi2g0773 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 253 IPR000504 GO:0003723
Vvi2g0773 253 Gene3D - 172 253 IPR012677 -
Vvi2g0773 253 PANTHER OS02G0815200 PROTEIN 67 252 - -
Vvi2g0773 253 SUPERFAMILY RNA-binding domain, RBD 85 252 IPR035979 GO:0003676
Vvi2g0773 253 SMART rrm1_1 90 162 IPR000504 GO:0003723
Vvi2g0773 253 SMART rrm1_1 189 253 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0773 Vvi-Chr2 7590303 7597949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0773 90 253 Eukaryotic Initiation Factors Gene Family AT4G34110 32.961 1.41e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0773 - - vvi:100243747 444.506