Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g0773 | ATGGCGGCGCTGGAAGCTTCACTCTCCATCTTCTCACTCTACCGTTCTTCTTCCTCCAAATTACTCTTCTCTCATAGACCTCCACCCTCAATGAGTCTCCACTCCTCTGCTTTTATCCCTTCCATTTGTCTCAAATACCCTCTCTATCCTCTCCCCCTTCTCTACACCAACCCCACTACAAAGTTCAGCTTTGAGCTGTGCTCTTCAGTTCAGGAAATAGAAGTAGAAGCAAAACCAGAGCAAACCCAAGAGCCAAATCAGAAAAGAAAGCTCTTTGTCTTGAATTTGCCATGGTCTCTCTCTGTTGTGGACATCAAGAACCTTTTTGGGGAATGTGGAACTGTCACTGATGTGGAGATTATAAAGCAAAAGGATGGGAGGAGCAGGGGTTATGCCTTTGTTACAATGGATTCTGGAGAAGAAGCTCAGGCAGTTGTCGAGAAATTTGACTCTTATGAATTATCAGGGAGGATAATTAGGGTAGAGTTTGCAAAGAGATTCAAGAAACCTTCTCCTCCTCCTCCTCCTCCTCCAGCAGGTCCTCCTGCTGGAGAGACACGCCATAAGCTTTATGTGTCCAATCTTGCATGGAAAGTACGGTCTACCCATCTCAGAGAATTTTTCTCCAGTAATTTTAATCCTGTTTCAGTTAGAGTTGTCTTTGATAGCCCTTCTGGAAGATCTGGTGGTTATGGGTTTGCCTCATTTGCCACAAAGGAGGAAGCAGAGGCTGCGATTTCTGCTTTGGATGGGAAGGTATAA | 762 | 0.4501 | MAALEASLSIFSLYRSSSSKLLFSHRPPPSMSLHSSAFIPSICLKYPLYPLPLLYTNPTTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKV* | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g0773 | 253 | CDD | RRM_SF | 91 | 162 | - | - | |
Vvi2g0773 | 253 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 89 | 166 | IPR000504 | GO:0003723 | |
Vvi2g0773 | 253 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 91 | 159 | IPR000504 | GO:0003723 | |
Vvi2g0773 | 253 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 252 | IPR000504 | GO:0003723 | |
Vvi2g0773 | 253 | Gene3D | - | 68 | 171 | IPR012677 | - | |
Vvi2g0773 | 253 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 253 | IPR000504 | GO:0003723 | |
Vvi2g0773 | 253 | Gene3D | - | 172 | 253 | IPR012677 | - | |
Vvi2g0773 | 253 | PANTHER | OS02G0815200 PROTEIN | 67 | 252 | - | - | |
Vvi2g0773 | 253 | SUPERFAMILY | RNA-binding domain, RBD | 85 | 252 | IPR035979 | GO:0003676 | |
Vvi2g0773 | 253 | SMART | rrm1_1 | 90 | 162 | IPR000504 | GO:0003723 | |
Vvi2g0773 | 253 | SMART | rrm1_1 | 189 | 253 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi2g0773 | Vvi-Chr2 | 7590303 | 7597949 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi2g0773 | 90 | 253 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 32.961 | 1.41e-18 | 82.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g0773 | - | - | vvi:100243747 | 444.506 |